RetrogeneDB ID:
retro_mputfur_917
Organism:
Location:
GL896971.1:8962257-8962863 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.68 %
Coverage:
91.82 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
GUK1
Parental gene aliases:
No gene alias available
Parental gene description:
guanylate kinase 1 [Source:HGNC Symbol;Acc:4693]

Genomic region (view in browser)





>retro_mputfur_917
CTTCATCCAGGGATGTCAGGACCTTGGCCTGTCCAGCTGAGTGGACTCTCAGGGGCCGGG
AAGAGCACCCTGTTCAAGAGACTCCTGCAGGAGCACCGCAGTGTCTTCGGGTTCAGCGTG
TCCCATACCACGCCGGACCTGCGGCCTTGAGAAGAGAATGGCAGAGATTACTACTTCGTG
ACCAGGGCGGTGAGGCAGCGGGACATGGCCACCGGAGACTTCATCGAGCACGCTGAGTTC
TCGGGGGACGTGGATGGGACTAGCAAAGCAGCTGTGCAGGCCGTTCAGGCCAGGAACGGC
ATCTGCGCACTGGACGTTGACCTGCAGGGCGTGCGTGACATCAGGAAGACGGACCTGTGG
CCCATCTACATCTTCGTGGGGCTGCCCTCGCTGGACGTCCTGGAGCAGCATCTGCGGCGG
CGCAACACGGAGACAGAGGAGAGCCTGGCCAAGCGTCTGGCCTCCGCTTGGGTGGACATG
GAGAGCAGCAAGAAACAGGGCCTGTTCGACCTGGTCATCATCAACGACAACCTGGACATG
GCCTACCAGACCCTGGAGGAGGCGCTGGCGGAGGAAATCAAGAAGGTTCAGAAGACCAGT
TGCTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPAGMSGPRPVVLSGPSGAGKSTLLKRLLQEHGSVFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKAAVRAVQAMNR
L..GMSGP.PV.LSG.SGAGKSTL.KRLLQEH.SVFGFSVSHTT.D.RP.EENG.DYYFVTR.V.QRD.A.GDFIEHAEFSG...GTSKAAV.AVQA.N.
Retrocopy
LHPGMSGPWPVQLSGLSGAGKSTLFKRLLQEHRSVFGFSVSHTTPDLRP*EENGRDYYFVTRAVRQRDMATGDFIEHAEFSGDVDGTSKAAVQAVQARNG


Parental protein
ICVLDVDLQGVRNIKKTDLRPIYIFVQPPSLDVLEQRLRQRNTETEESLAKRLAAARVDMESSKEQGLFDLVIINDNLDTAYRTLEEALSEEIKNVQRTS
IC.LDVDLQGVR.I.KTDL.PIYIFV..PSLDVLEQ.LR.RNTETEESLAKRLA.A.VDMESSK.QGLFDLVIINDNLD.AY.TLEEAL.EEIK.VQ.TS
Retrocopy
ICALDVDLQGVRDIRKTDLWPIYIFVGLPSLDVLEQHLRRRNTETEESLAKRLASAWVDMESSKKQGLFDLVIINDNLDMAYQTLEEALAEEIKKVQKTS


Parental protein
CS
CS
Retrocopy
CS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide