RetrogeneDB ID:
retro_mputfur_918
Organism:
Location:
GL896971.1:5822563-5823032 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.99 %
Coverage:
73.71 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
Atp5o
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit [Source:MGI Symbol;Acc:MGI:106341]

Genomic region (view in browser)





>retro_mputfur_918
ATGGCTGCCCCAGCAGTGTCTGGGCTGTCTCAGTCAGTTCAATGTTTTAGTACATCTGTG
GTCAGACCATTTTCCAAGCTTGTGAGGCGGCATGTTCAGGTATATGGTATCGAAGATTGC
TATGATACTGCTCTTTATTCTGCTACATCTAAACAGAATAAACTGTCACAAGTGGGAAAA
GAATTCTTGAGAGTAGCACAAATCTTGAAGGAACCCAAAATGGCTGCTTCCATGATGAGT
CCCTATGTAAAGCATTCCGCGAAAGTGAAAAGCTAAATGACTTGAGCTCAAAAGAGAGGT
TCTCTCCTCTCACATCCAACCTGATCAATTTGCTTGCTGAGAATGGTCACTTGGACAATA
CCCCTGGAGTCACATCTGCCTTTCGACCATGATAAGCATCCACCAAGGAGAAATATTGTG
CACAGAGACCGCTGCATCTCCTTTAGATGAAACCACTTTTACTGACTTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVPAVSGLSRQVRCFSTTVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKMAASIMNPYIKRSVKVKS-LNDMSAKE
MA.PAVSGLS..V.CFST.VVRPFSKLVR..VQVYGIE..Y.TALYSA.SKQNKL.QV.KE.LRVAQILKEPKMAAS.M.PY.K.S.KVKS.LND.S.KE
Retrocopy
MAAPAVSGLSQSVQCFSTSVVRPFSKLVRRHVQVYGIEDCYDTALYSATSKQNKLSQVGKEFLRVAQILKEPKMAASMMSPYVKHSAKVKS/LNDLSSKE


Parental protein
RFSPLTSNLINLLAENGRLDNTPGVISAF-STMMSVHRGEVPCTVTTASPLDEATLTEL
RFSPLTSNLINLLAENG.LDNTPGV.SAF.STM.S.H.GE..CT.T.ASPLDE.T.T.L
Retrocopy
RFSPLTSNLINLLAENGHLDNTPGVTSAF/STMISIHQGEILCTETAASPLDETTFTDL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide