RetrogeneDB ID:
retro_mputfur_920
Organism:
Location:
GL896972.1:2475865-2476674 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.98 %
Coverage:
67.84 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_920
GGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTTGGGCAAGTCT
ACCACTCCTGGTCATGTGATCTACAAATGTGGTGGGATCGACAAAAGAATTATCGAAAAA
TTCGAGAAGGAGGCTGCTGAGAAGGGAAAAGACTCTTTCAAATACGCCTCGTCTTGGATA
AACTGAAAGCTGAACGTGAACATAGTATCACCACTGATATCTCCCTGTGGAAATTCGAGA
CCAGCAAGTATTATGTGACCATCACTGATGCTCCAGGACACAGAGACTTTATCAATTACA
TGATTTCAGGCACATCCTAGGCTGGCTGTGCCATCCTGATTGTTGCTGTTGGCATTGGTG
AATTTGAAGCAGATATATCCAAGAATGGGCGGATCCATGAGCATTCCCTTCTGGCTTACA
CACTGGGTGTAAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAGCTACTCT
ACAGCCAGAAGAGATACGAGGAAATCATTAAGGAAGTCAGCACCTACATTAAGAAAATTG
GCTGCAACCCCGACACAGTAGCATCTGTGCCAATTTCTGGTTAGAATGGTGACAATATGC
TGGAGCCCAGGGCTAGCATGCCTTGGTTCAAGGGATGGAAAGTCACCCGCAAAGACGGGA
ATGCCAGGGGAACCACCCTGCTGGAAGCTCTGGATTGCATTCTGCCACCAACTCATCCAA
CTGACAAGCCCTTTGGTCTGCCTCTCCAGGACGTCTACAAAATTGGTAGTATTGGTACTG
TCCCTGTGGGCCGGGTGGAGACTGGTGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYA-WVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK
GKEKTHINIVVIGHVD.GKSTT.GH.IYKCGGIDKR.IEKFEKEAAE.GK.SFKYA..VLDKLKAERE..IT.DISLWKFETSKYYVTI.DAPGHRDFI.
Retrocopy
GKEKTHINIVVIGHVDLGKSTTPGHVIYKCGGIDKRIIEKFEKEAAEKGKDSFKYA/LVLDKLKAEREHSITTDISLWKFETSKYYVTITDAPGHRDFIN


Parental protein
NMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN
.MI.GTS.A.CA.LIVA.G.GEFEA.ISKNG...EH.LLAYTLGVKQLIVGVNKMDSTE..YSQKRYEEI.KEVSTYIKKIG.NPDTVA.VPISG.NGDN
Retrocopy
YMISGTS*AGCAILIVAVGIGEFEADISKNGRIHEHSLLAYTLGVKQLIVGVNKMDSTELLYSQKRYEEIIKEVSTYIKKIGCNPDTVASVPISG*NGDN


Parental protein
MLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV
MLEP.A.MPWFKGWKVTRKDGNA.GTTLLEALDCILPPT.PTDKP..LPLQDVYKIG.IGTVPVGRVETGV
Retrocopy
MLEPRASMPWFKGWKVTRKDGNARGTTLLEALDCILPPTHPTDKPFGLPLQDVYKIGSIGTVPVGRVETGV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide