RetrogeneDB ID:
retro_mputfur_925
Organism:
Location:
GL896974.1:4898409-4899409 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.85 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_925
ATGGCGGAGGTCGGAGTAAACAGATTCAGCGTATTGGGCACCTGGTCACCAGGGCTGCTT
TTAACTCTGGCATAGTGGATACTGTTGCCGTTAAGGACTGCTTCATTGACCTCAACTACA
TGGTCTACAAGTTCCAGTATGATTCCACCCATGGCAAATTCCACAGCACAGTCCAGGCTG
AGAACAGGAAACTTGTCATCAATGGAATGTCCATCTCCATCTTCCAGGAGTGAGATTCCG
CCAACATCAAAAGGGGTGATGCTAGTGCTGAGCATGTTGTGGAGTCCACTGGGGTCTCCA
CCACCATGGAGAAGCCTGGGGTTCACTTGGAGGGTAGGGACGGGGGGATGGTCATCATCT
TTGCCCCTTCTGATGATGCCCCCATGTTTGTGATGGATGTGAACCATGAGAAGTATGAAA
GCTCCCTCAAGATGGTTGGCAATGCCTCCTGTACCACCATATGCTTGGCCCCACTGGCCA
AGGTCATCCATGACAACCATGGCATGGTAGAGGAACTCATGACCTCAGTCCATGCCACAC
TGTCACCATGACGTCTATGGATAGCCCCTCTGGCAAGCTGTGGCGTGATGGCCAAGGGGC
TGCCCAGAACATTATCCCTGCTTCTACTGGCGCTGCCAAGGCTGTAGGCAAGGTCATCCC
TGGGCAGAATACGAAGCTCACTGGCATGGCCTTCCATGTCCCTATCCGCAACTTGTCAAT
CATGGATCTGACCTGCTGCCTGGAGAAAGCTGCCAAATACAATGACATCAAGAAGGCGGT
GATGCAGGCATCAAAGTGCCCCCTCAAGGGCATCCTGGGCTCCACTGAGGATCAGGTTTG
CCCTGCAACATTAACAGTGACACCCACTCTATCATCTTTAATGCTGGGGCTGGCATAGTC
CTCAGTGACCTCTTTGTTAAGCTCATTTCCTAGTATGACAATGAATTTGGCTCCAACAAC
TGGGTGGTGGATCTTATGGTCCAGATGGGCCTCCAAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFG-RIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGV
M..VGVN.F..RIG.LVTRAAFNSG.VD.VA..D.FIDLNYMVY.FQYDSTHGKF..TV.AEN.KLVING.SISIFQE.D.ANIK.GDA.AE.VVESTGV
Retrocopy
MAEVGVNRFS/RIGHLVTRAAFNSGIVDTVAVKDCFIDLNYMVYKFQYDSTHGKFHSTVQAENRKLVINGMSISIFQE*DSANIKRGDASAEHVVESTGV


Parental protein
FTTMEKAGAHLKG-GAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAI-TATQKTVDGPSGKLWRDG
.TTMEK.G.HL.G.....VII.APS.DAPMFVM.VNHEKY..SLK.V.NASCTT.CLAPLAKVIHDN.G.VE.LMT.VHA..T.T....D.PSGKLWRDG
Retrocopy
STTMEKPGVHLEGRDGGMVIIFAPSDDAPMFVMDVNHEKYESSLKMVGNASCTTICLAPLAKVIHDNHGMVEELMTSVHAT/TVTMTSMDSPSGKLWRDG


Parental protein
RGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQV-VSCDFNSDTHSSTFDAG
.GAAQNIIPASTGAAKAVGKVIP..N.KLTGMAF.VP..N.S..DLTC.LEKAAKY.DIKK.V.QAS..PLKGILG.TEDQV...C..NSDTHS..F.AG
Retrocopy
QGAAQNIIPASTGAAKAVGKVIPGQNTKLTGMAFHVPIRNLSIMDLTCCLEKAAKYNDIKKAVMQASKCPLKGILGSTEDQV/LPCNINSDTHSIIFNAG


Parental protein
AGIALNDHFVKLISWYDNEFGYSNRVVDLMVHM-ASKE
AGI.L.D.FVKLIS.YDNEFG..N.VVDLMV.M.ASKE
Retrocopy
AGIVLSDLFVKLIS*YDNEFGSNNWVVDLMVQM\ASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide