RetrogeneDB ID:
retro_mputfur_926
Organism:
Location:
GL896974.1:3396734-3397230 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.07 %
Coverage:
79.13 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_926
AAGATGAAAGAAACTCCCACGAACCAGGAGAAAGTCACCAAGCTACAAGCACAAGTGCAC
ACGGGTGGGAAAAGAACTGGTCACAGAAAGAAGAAGATGGTTCGTAGAACAGCTCCAGCG
GATGATAAAAAAGAAACTTCAGTTCGCCTTCAAGTTAGTGGTAAACAATATCTCTGGTAC
TGAAGAAACAAGTTGTACTGAAGTTACAAACCAAGGAAGAGTGGTCTATTTTAACAATCC
CAAAGTGCAGGCATCCCTGGCAGCAAATACTTCCACCAGTTCACACCATGCTGAGACAAA
GCAGCTGCCAGAAATGCCACCCAGGATCTTACACCAGCTGGGGGCAGACAGTGTGACTCG
TTTAAGGAGACTGGCTGAAGCTCTGCCCACACAGTCTGGGGATGGAAGAGCACCACATGC
TACTGGGGAAGATGATGATGAGGAAGTTCCAGATCTTGTGGAGACTTTTGGTGAAGCTTC
CAAGAATGACGTCGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKETIMNQEKLAKLQAQVRIGGKGTA-RRKKKVVHRTATADDK-KLQFSLKKLGVNNISGIEEVNM--FTNQGTVIHFNNPKVQASLAANTFTITGHAE
.MKET..NQEK..KLQAQV..GGK.T..R.KK.V.......D.K.KLQF..K.L.VNNISG.EE......TNQG.V..FNNPKVQASLAANT.T...HAE
Retrocopy
KMKETPTNQEKVTKLQAQVHTGGKRTGHRKKKMVRRTAPADDKK\KLQFAFK-LVVNNISGTEETSCTEVTNQGRVVYFNNPKVQASLAANTSTSSHHAE


Parental protein
TKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
TKQL.EM.P.IL.QLGADS.T.LRRLAEALP.QS.DG.AP.ATGEDDD.EVPDLVE.F.EASKN...
Retrocopy
TKQLPEMPPRILHQLGADSVTRLRRLAEALPTQSGDGRAPHATGEDDDEEVPDLVETFGEASKNDVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide