RetrogeneDB ID:
retro_mputfur_928
Organism:
Location:
GL896974.1:7000985-7001292 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.65 %
Coverage:
90.35 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
PPDPF
Parental gene aliases:
No gene alias available
Parental gene description:
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Genomic region (view in browser)





>retro_mputfur_928
GTACACGCTCATGACCACCCACGGCCATTACCATTATCTGTTTCCAGGAACAGCTCCCGC
GGAAGTGCAGAGTACCCTGGGGAAGTCATGCCTCACCACCTCGGTCTCCCCAAGGCCCAC
CCAGGTCACTGGGCAAGCTTCTTTTTCGGGAAACCTACTCTCCCATACATGGCTGCAGTG
TTAGAGTCCCCAGAACGATGGGCATCCTCCCAGGCCTCCAGCAACACCATCCCAGGGACT
TGCCTCTCTGGAAGCTATGAAGAAGCAGCCTGATGGCCAGCCTGGCAAAGCCAGCACGGG
GGACCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VATHDYYRRRLGSTSSSSSCGSAECAGEAIPHPPGLPKADPGHWWASFFFGKSTVPFMATVLESPERSEPPQASSGTITSD-PAPEAVRKQPGGRPGKAN
V..HD..R....S.S..SS.GSAE..GE..PH..GLPKA.PGH.WASFFFGK.T.P.MA.VLESPER....QASS.TI.......EA..KQP.G.PGKA.
Retrocopy
VHAHDHPRPLPLSVSRNSSRGSAEYPGEVMPHHLGLPKAHPGH-WASFFFGKPTLPYMAAVLESPERWASSQASSNTIPGT\ASLEAMKKQPDGQPGKAS


Parental protein
VGPP
.G.P
Retrocopy
TGDP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide