RetrogeneDB ID:
retro_mputfur_933
Organism:
Location:
GL896976.1:8083899-8084554 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.28 %
Coverage:
73.49 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_933
GGGGCATCAGTTCAAGGACCTTCCAGTTTGGACTATATAGTGGCTTCATAACTGTTAACA
GTGTTTGCATTCATAGAGCAGAAATTAAGCAAAGGATTCATGAAATCTTTTCATGTAAAG
ATCAAGATGGAAAAATTGGGTTCAGGCTTAATTCAATAGATAACAGTTTATTTGTTCAGC
TGGTGCAGGCAAATTCTCCAGTCTCACTGGTTGGCCTGAGATTTGGGGACCAAGTGCTCC
AGATCAGTGGGGAAAACTGTGTAGGCTGGAGCTCTAAAAAGCACACGAGGTGCTCAAATA
GGCTTTTGGAGAGATGATTATTATGACTGTGCATGACAGGCCCTTTGAATGGACAATTAC
CAGGCATGAGAATAGTACTGGATGTGTTGGCTTTATCTTTAAAAATGGAAGGAAAACATC
CACAGTGAAAGATAGTTCTGCAGCCAGAAACGGTCTTCTCAGTGAACGTAACATCTGTGA
AGTCAATGGGCAGAATGTCATTGAGCTGAAGGACTCTCAACTTGCAGACATACTGTCAAC
ATCTGAGACTGTAGTTACTATTACAATCATGCCAGCTTTTATCTTTGAGCATATTATTAA
ATGGATGGCACCAAGCATTATGAAAAGCCTAAGAGACCACACCATTCCTGAGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GQLVARPSSMNYMVAP-VTGNDVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK-AHKV
G..V..PSS..Y.VA...T.N.V.I.RAEIKQ.I.E...CKDQDGKIG.RL.SIDN..FVQLVQANSP.SLVGLRFGDQVLQI.GENC.GWSS.K.AH.V
Retrocopy
GASVQGPSSLDYIVAS/ITVNSVCIHRAEIKQRIHEIFSCKDQDGKIGFRLNSIDNSLFVQLVQANSPVSLVGLRFGDQVLQISGENCVGWSSKK/AHEV


Parental protein
LKQAFGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNVIGLKDSQIADILSTSETVVTITIMPAFIFEH
LK.AFGE.I.MTV.DRPFE.T.T.H..STG.VGFIFKNG..TS.VKDSSAARNGLL.E.NICEVNGQNVI.LKDSQ.ADILSTSETVVTITIMPAFIFEH
Retrocopy
LK*AFGEMIIMTVHDRPFEWTITRHENSTGCVGFIFKNGRKTSTVKDSSAARNGLLSERNICEVNGQNVIELKDSQLADILSTSETVVTITIMPAFIFEH


Parental protein
IIKRMAPSIMKSLMDHTIPEV
IIK.MAPSIMKSL.DHTIPEV
Retrocopy
IIKWMAPSIMKSLRDHTIPEV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide