RetrogeneDB ID:
retro_mputfur_934
Organism:
Location:
GL896976.1:857682-858063 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.81 %
Coverage:
78.75 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_934
ACAGAAAGGAAAAGAGGAAAGGTACCTGCTATGTATATGTTCTCTAGCCTTTTTAGAAAA
CATGGGGCTGTTCCCTTGATCACATACATCTACAGAATCTACAAAAAAAGGTGATATTGG
GGAGATCAAGGGAATGGGCACTGTTCACAAAGGAATGTCCCCACAAATGTTACCATGGCA
AAATTGGAAGTCTACAATGCTACCCAACATACCATTGGCATTGCTGCCAACAAACAAGTA
AAGGACAAGATTTTTGCCAAGAGAATTTGTGTATGTATTGAATATAGTAAACACTCAAAG
AGCTGAGAGAGCTTCCTGAAATGTGTGAAGGAAAATGACCAGAAAAATAAGGAAGCCAAA
GAGAAGGGTACTTAGGTTCAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TNTKGKRRGTRYMFSRPFRKHGVVPLATYM-RIYKKGDIVDIKGMGTV-QKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHS
T..K.......YMFS..FRKHG.VPL.TY..RIYKK.......G.G...Q...P......K...VYN.TQH..GI..NKQVK.KI.AKRI.V.IE..KHS
Retrocopy
TERKRGKVPAMYMFSSLFRKHGAVPLITYIYRIYKKR*YWGDQGNGHCSQRNVPTNVTMAKL-EVYNATQHTIGIAANKQVKDKIFAKRICVCIEYSKHS


Parental protein
KSRDSFLKRVKENDQKKKEAKEKGTWVQ
KS..SFLK.VKENDQK.KEAKEKGT.VQ
Retrocopy
KS*ESFLKCVKENDQKNKEAKEKGT*VQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide