RetrogeneDB ID:
retro_mputfur_935
Organism:
Location:
GL896976.1:3885234-3885824 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.21 %
Coverage:
97.04 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL13A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]

Genomic region (view in browser)





>retro_mputfur_935
CTGGTCCTGGATGGCCAGGTCATCTCCTGGGCCACCTGGCAGCCATCATGGTCAAACAGG
TGTTCCTAGGTCAGAAGGCTGTATTCATGCACTATGAGGGCATCAACATTTCCGGCAATT
TCTACAGAAACAAATTGAAGTACCTGGCCTTCCTCCACAAGCACATGAACACCAGCCCAT
CCCATGGCCCCCACCACTTCTGAGCAACCAGCCGTGACTTTTGGCAGACAGTGCAAGGCC
TGCTGCCTCATAGGACCAAGCGAGGCCAGGCTGCCCTGGGTCGCCTCAAGGTGTTTGATG
GGATCCCACCACCTTATGACAGGAAAAAGAAGATGGTGCTTCCTGCTGCCCTCATAGCGG
TGCACATGAAGCCTACAGGGAAGTTGGTTTTCCTGGGGTGCCTGGCTCACGAGGTTGGTT
GGAAATACCAGGGAATGGCAGTCACCCTGGAGGAGAAGAGGAAGGGGAAGGCCAAGACCC
ATTACCAGAAGAAAAAACTGCTCATGAGGTTACAAATACAGACCAGAAAGAATGTAGAGA
GGAATACTGATAAATATTCAGAGGACCTCAAGATCCACAGATTCCTGGTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LVLDGR-GHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVF
LVLDG..GHLLG.LAAI..KQV.LG.K.V....EGINISGNFYRNKLKYLAFL.K.MNT.PS.GP.HF.A.SR.FW.TV.G.LPH.TKRGQAAL.RLKVF
Retrocopy
LVLDGQ/GHLLGHLAAIMVKQVFLGQKAVFMHYEGINISGNFYRNKLKYLAFLHKHMNTSPSHGPHHF*ATSRDFWQTVQGLLPHRTKRGQAALGRLKVF


Parental protein
DGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV
DGIPPPYD.KK.MV.PAAL..V..KPT.K...LG.LAHEVGWKYQ....TLEEKRK.KAK.HY.KKK.LMRL..Q..KNVE...DKY.E.LK.H..LV
Retrocopy
DGIPPPYDRKKKMVLPAALIAVHMKPTGKLVFLGCLAHEVGWKYQGMAVTLEEKRKGKAKTHYQKKKLLMRLQIQTRKNVERNTDKYSEDLKIHRFLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide