RetrogeneDB ID:
retro_mputfur_936
Organism:
Location:
GL896976.1:6344133-6344517 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
59.38 %
Coverage:
52.67 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS3
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S3 [Source:HGNC Symbol;Acc:10420]

Genomic region (view in browser)





>retro_mputfur_936
ATTCCCAAGAAGAGGAAGCTTGTGGCCAACGGCATCTTCAAAGCTCGAAGGAACGAGCTT
CTCACTCAGGAGTTGGCTGAGCACGCCTACCCTGGAGCTGAGGTACGAGTTATAGGAACC
GGCACAGAAATCATGACCTTGGCCACCAGGATGTACAAAGCCTTTGGTGAAGAGGGCTGG
TGGATCTGAGAGCCGACCGTGGTGGTTCAGCAGACGTCTGACTTCCCCGAGGGCAGTGGA
GAGCTTTATGCTAAAAAGCTGGCCACGGGAGGTCTGTGTGCTGTCACCCAGGCCAGGTCT
CTGAGTGACCAGCTCCCAGGAGACCCTGCTGTGTGGAGGGCCTGCCCCGGTGCACCGTGC
TTCCCCGGGAAGAGTGGGGCCAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAES
I.KKRK.VA.GIFKA..NE.LT.ELAE..Y.G.EVRV..T.TEI..LATR.....GE.G..I.E.T.VVQ....FPEGS.ELYA.K.AT.GLCA..QA.S
Retrocopy
IPKKRKLVANGIFKARRNELLTQELAEHAYPGAEVRVIGTGTEIMTLATRMYKAFGEEGWWI*EPTVVVQQTSDFPEGSGELYAKKLATGGLCAVTQARS


Parental protein
LRYKLLGGLAVRRACYGVLRFIMESGAK
L...L.G..AV.RAC.G...F...SGAK
Retrocopy
LSDQLPGDPAVWRACPGAPCFPGKSGAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide