RetrogeneDB ID:
retro_mputfur_940
Organism:
Location:
GL896977.1:6025696-6026116 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.72 %
Coverage:
67.14 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
HMGB2
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group box 2 [Source:HGNC Symbol;Acc:5000]

Genomic region (view in browser)





>retro_mputfur_940
GGCAAAGGAGATCCTAAGAAGCCGAGAGGCAACATGTCATCATGTGCATTCTTTGTGCAA
ACTTGCCGAGAGGAGCACAAGAAGCAGCACCCAGATGCTTCAGTCAGCTTCTCAGAGTTT
TCTAAGAAGGGCTCAGGAAGGTGGAAGACCATGTCTGCTAAAGAGAAAGGAAAATTTGAA
GACATGGCAAAGGCTGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATTCTCCCT
AAAGGGGAAACCAAAAAAGAAGTTCAAGGATCCCAATGCACCCCAGAGGCCTCCTTCGGC
CTTTTCTTGTTTTGTTCTGAGGATCGCCCAAAAATCAAAGAACATCCAGGCCTATCCATC
GGTGATGTTGCAAAGAAACTGGGAGAAATGTGGAGTAACACTGCTGCAGATGACAAGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGD-KKGKKKDPNAPKRPPS
GKGDP.KPRG.MSS.AFFVQTCREEHKK.HPD.SV.F.EFSKK.S.RWKTMSAKEK.KFEDMAK.DKARY.REMK.Y..PKG...K.K.KDPNAP.RPPS
Retrocopy
GKGDPKKPRGNMSSCAFFVQTCREEHKKQHPDASVSFSEFSKKGSGRWKTMSAKEKGKFEDMAKADKARYEREMKTYILPKGE\PKKKFKDPNAPQRPPS


Parental protein
AF-FLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ
AF.FLFCSE.RPKIK.EHPGLSIGD.AKKLGEMWS...A.DKQ
Retrocopy
AF/FLFCSEDRPKIK-EHPGLSIGDVAKKLGEMWSNTAADDKQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide