RetrogeneDB ID:
retro_mputfur_942
Organism:
Location:
GL896977.1:2541245-2541674 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
83.56 %
Coverage:
96.64 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
CALM2
Parental gene aliases:
No gene alias available
Parental gene description:
calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]

Genomic region (view in browser)





>retro_mputfur_942
ACTGAAGAGCAGATTGCAGAAGTCAAAGATGCCTTTTCGCCATTTGACAAGGATGGTGAC
AGAACTGTAACAGCAAAGGAATTGGGAACTGAAATGAGGTCTCTTGGGCAGAATCCCACA
GAAGCAGAGTTACAGGACATGATTAATGAAGTAGATGCTGATGATAATGGCACAATTGAC
TTTCCAGAATTTCTGACAATGATGGCAAGAAAAATGAAAGGCATGGACAAGTGAAGAAGA
AATTAGAGAAGCATTCCATGTGTTTGATAGGATGTCAATGGCTGTATTATGGCAGCAGAG
CTTTGCCATGTGATGACAAACCTGGGAGAGAAACTGACAGATGAGGTTGATGAAATGATC
AGGGAAGCAGATCTTGATGGTGATGGTCAAGCAAACTATGAAGTGCTTGTACAAATGATG
ATAGCGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD-SEEEIREAFRVFDK-DGNGYISA
TEEQIAE.K.AFS.FDKDGD.T.T.KELGT.MRSLGQNPTEAELQDMINEVDAD.NGTIDFPEFLTMMARKMK..D.SEEEIREAF.VFD..D.NG.I.A
Retrocopy
TEEQIAEVKDAFSPFDKDGDRTVTAKELGTEMRSLGQNPTEAELQDMINEVDADDNGTIDFPEFLTMMARKMKGMD\SEEEIREAFHVFDR/DVNGCIMA


Parental protein
AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
AEL.HVMTNLGEKLTD.EVDEMIREAD.DGDGQ.NYE..VQMM.AK
Retrocopy
AELCHVMTNLGEKLTD-EVDEMIREADLDGDGQANYEVLVQMMIAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide