RetrogeneDB ID:
retro_mputfur_943
Organism:
Location:
GL896977.1:4731316-4731768 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.18 %
Coverage:
98.68 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS18
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]

Genomic region (view in browser)





>retro_mputfur_943
CTAGTGATCCCTGAGAAGTTCAGCATATTTTGTGAGAACTCGATACCAGTTTTGATGGTT
GGGCAGAAAAGAACCTTTGCCATCACTGCAGTGAAGGGTGTGAGGCAAAGACAGGCTCAC
GTGGTATTGTGGAAAGCAGAGAGCGACCTCACCAGGAAGGCAGGAGAGCTGACGGAGGAT
GAGATGGAACGTGTGATTGCCATTATGCAGAATCCATACCAGTATAAGATTCCAGACTGG
TTCTTGAACACACTAAAGGATATTAAGTATGGAAAAAAATACAACCAGGTCCTGGCTCAT
GGTCTGGACAGCAAACTCTGGGAAGACCTGCAGCAATGGAAAAGGACTTGGGCTCACACA
GGGCTGCAACACTTTTGGGGACTTCGTGTCCAAGGCCAACACTTAAGATCATAGGCTGCT
GAGGCCGCACCATGGGTGTTTCCAAGAGGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LVIPEKF-QHILRVLNTNIDG-RRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGK-YSQVL
LVIPEKF.QHIL..L.T..DG...K..FAITA.KGV..R.AHVVL.KA..DLT..AGELTEDE.ERVI.IMQNP.QYKIPDWFLN..KD.K.GK.Y.QVL
Retrocopy
LVIPEKF/QHIL*ELDTSFDG\GQKRTFAITAVKGVRQRQAHVVLWKAESDLTRKAGELTEDEMERVIAIMQNPYQYKIPDWFLNTLKDIKYGKKYNQVL


Parental protein
ANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH-TKTTGRRGRTVGVSKKK
A.GLD.KL.EDL...K...AH.GL.HFWGLRV.GQH..K..G..GRT.GVSK.K
Retrocopy
AHGLDSKLWEDLQQWKRTWAHTGLQHFWGLRVQGQH/LKIIGC*GRTMGVSKRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide