RetrogeneDB ID:
retro_mputfur_957
Organism:
Location:
GL896981.1:924514-925085 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.63 %
Coverage:
99.48 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_957
ATGCAGACAATTAAGGGCATTTTTGTGGGTGAACAGTGCTGTTGGTAAAACATGTTTCCT
GATATCCTACACAATAAACAAATTTCCAACTGAGTATGTATGGGCTGCTTTTGACATCTA
TGCAGTTACAGTTATGATTGGTGGAGAGCCATATACTCTTGGTCTTTTTGATACAGCAGG
GTAAGAGGATTATGACAGATTACGACCACCAAGTTATCCACAAACAGATGTATTTCTAGT
CTGTTTTTCAGTGGTTTCTCCATCCTCATTTGAAAATGTGAAGGAAAAGCAGGTGCCTGA
GGTAACTCACCACTGTCCAAAGACTCCTTTCTTTCTTGTTGGGACTCAAACTGGTCTCTG
AGATGACCCCTCTTCAACTGAGAAACTTGCTAAGAACAAACAGAAGCCTATTATTCCAGA
GACTGCTGAAAAGTTGGCCCAGGATCTGAAGGCAGTCAAGTATGTGGAGTGTTCTGCACT
CACACAGAAAGGCCTAAAGAATGTATTTGACGAAGCAATGTGGGCTGCCCTGGAGCCTGC
CGGACCAGAGAAGAGCCGCAGGTGTGTGCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQTIKCVVVGD-GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVP
MQTIK...VG...AVGKTC.LISYT.NKFP.EYV...FD.YAVTVMIGGEPYTLGLFDTAG.EDYDRLRP.SYPQTDVFLVCFSVVSPSSFENVKEK.VP
Retrocopy
MQTIKGIFVGE\SAVGKTCFLISYTINKFPTEYVWAAFDIYAVTVMIGGEPYTLGLFDTAG*EDYDRLRPPSYPQTDVFLVCFSVVSPSSFENVKEKQVP


Parental protein
EITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKCCI
E.THHCPKTPF.LVGTQ..L.DDPS..EKLAKNKQKPI.PETAEKLA.DLKAVKYVECSALTQ.GLKNVFDEA..AALEP......R.C..
Retrocopy
EVTHHCPKTPFFLVGTQTGL*DDPSSTEKLAKNKQKPIIPETAEKLAQDLKAVKYVECSALTQKGLKNVFDEAMWAALEPAGPEKSRRCVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide