RetrogeneDB ID:
retro_mputfur_958
Organism:
Location:
GL896981.1:1437607-1439545 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.74 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/TrEMBL;Acc:G9K4X7]

Genomic region (view in browser)





>retro_mputfur_958
ATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTC
TTCAAGCACGGGAAAGTGGAAATAATTGCCAATGATCAGGGAAACCAGACCACCCCAAGT
TATGTTGCCTTCACGGACACCAAACGATTGATTGGTGATGCTGCAAAGAACCAAGTTGCG
ATGAACCCCACCAACACAGTTTTTGATGCCAAATGCCTGATTGGACAGAGATTTGATGAT
GCTGTTGTCCAGTCTGATATGAAGCATTGGCCTTTCATGGTGGTGAATGATGCTGGCAGG
CCCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGCTTTTATCTAGAGGAGGTGTCT
TCTATGGTTTTCATGAAAATTAAAGAAATCGCAGAGGCTTATCTTGGGAGGACTGTTACC
AATGCAGTTGTCACAGTACCTGCATACTTCAATGATTCTCAGCGTCAGGCTACCAAAGAT
GCTGGAACTATTGCTGGTCTCAATGTACTTCGAATCATCAATGAGCCAACTGCTGCTGCT
ATTGCTTATGGCTTAGACAAAAAAGTTGGAGCTGAAAGGAATGTGCTGATCTTTGACTTA
GGAGGTGGCACTTTTGATGTGTCAGCCCTTACTATTGAAGATGGGATCTTTGAGGTTAAG
TCCACAGCTGGAGACACCCACTTAGGTGGAGGAGACTTGGACAACCGAATGGTCAACCAT
TTTATTGCAGAGTTCAAGCGCAAACATAAGAAAGATATCAGTGAAAACAAGAGGGAAGTT
CGTCGTCTCCATACTGCTTGTGAGCGTGCTAAGCGTACGCTTTCTTCCAACACCCAGGCC
AGTACTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATCACTCGTGCC
CGGTTTGAAGAATTAAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCT
CTTCTGGATGCCAAGTTAGACAAGTCTCAGATCCACGATATTGTTCTAGTGGGTGGTTCT
ACCCATATCCCCAAGATTCAGAAACTTCTCCAAGATTTATTCAATGGAAAAGACCTGAAT
AAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTT
TCTGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCAGTTTCT
CTTGGCATTGAAACTGCTGAAGGAGTCATGACTGTTCTTATCAAGCGTAATACTACCATT
CCTACCAAACAGACACAGACCTTCACCACCTACTCCGACTATTAGCCTGGTGTGCTTATT
CAGGTGTATGAAGGTGAGCATGCCATGACCAAGGACAACAATCTACTTGGAAAGTTTGAA
CTCACAGGCATACCTCCTGCTCCTCGTGGTGTCCCTCAGATTGAGGTCACTTTCGATATT
GATGCTAATGGCATCATCAATGTCTCTGCCGTGGATAAGAGCACAGGAAAAGAGAACAAG
ATTACCATCACTAATGACAAGGGCCACTTGAGCAAGGAAGATATTGAGCGCATGGTCCAG
GAAGCTGAGAAGTACAAAGCTGAAGATGAGAAACAGCGGGACAAGGTGTCTTCCAAGAAT
TCACTTGAGTCTTACGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAGGGC
AAGATAAATGATGATGACAAAAAGAAGATTCTTGACAAGTGCAATGAAATCATCAACTGG
CTTGATAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACACCAGCAGAAAGAGTTGGAG
AAAGTCTGCAACCCCATCATCACCAAGCTGTACCAGAGTGCAGGGGGCATGCCAGGAGGA
ATGCCTGGAGGCTTCTCTGGTGGTGGAGCTCCTCCCTCTGGTGGTGGCTCCTCTGGGCCC
ACCATTGAAGAGGTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGR
MSKGPAVGIDLGTTYSCVGVF.HGKVEIIANDQGN.TTPSYVAFTDT.RLIGDAAKNQVAMNPTNTVFDAK.LIG.RFDDAVVQSDMKHWPFMVVNDAGR
Retrocopy
MSKGPAVGIDLGTTYSCVGVFKHGKVEIIANDQGNQTTPSYVAFTDTKRLIGDAAKNQVAMNPTNTVFDAKCLIGQRFDDAVVQSDMKHWPFMVVNDAGR


Parental protein
PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDL
PKVQVEYKGETKSFY.EEVSSMV..K.KEIAEAYLG.TVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDL
Retrocopy
PKVQVEYKGETKSFYLEEVSSMVFMKIKEIAEAYLGRTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDL


Parental protein
GGGTFDVSILTIEDGIFEVKSTAGDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITRA
GGGTFDVS.LTIEDGIFEVKSTAGD.HLGG.D.DNRMVNHFIAEFKRKHKKDISENKR.VRRL.TACERAK.TLSS.TQAS.EIDSLYEGIDFYTSITRA
Retrocopy
GGGTFDVSALTIEDGIFEVKSTAGDTHLGGGDLDNRMVNHFIAEFKRKHKKDISENKREVRRLHTACERAKRTLSSNTQASTEIDSLYEGIDFYTSITRA


Parental protein
RFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLS
RFEELNADLFRGTLDPVEKAL.DAKLDKSQIHDIVLVGGST.IPKIQKLLQD.FNGK.LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTP.S
Retrocopy
RFEELNADLFRGTLDPVEKALLDAKLDKSQIHDIVLVGGSTHIPKIQKLLQDLFNGKDLNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPVS


Parental protein
LGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENK
LGIETA.GVMTVLIKRNTTIPTKQTQTFTTYSD..PGVLIQVYEGE.AMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI.NVSAVDKSTGKENK
Retrocopy
LGIETAEGVMTVLIKRNTTIPTKQTQTFTTYSDY*PGVLIQVYEGEHAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIINVSAVDKSTGKENK


Parental protein
ITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELE
ITITNDKG.LSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKIND.DK.KILDKCNEIINWLDKNQTAEKEEFEHQQKELE
Retrocopy
ITITNDKGHLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDDDKKKILDKCNEIINWLDKNQTAEKEEFEHQQKELE


Parental protein
KVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
KVCNPIITKLYQSAGGMPGGMPGGF.GGGAPPSGG.SSGPTIEEVD
Retrocopy
KVCNPIITKLYQSAGGMPGGMPGGFSGGGAPPSGGGSSGPTIEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide