RetrogeneDB ID:
retro_mputfur_96
Organism:
Location:
GL897049.1:1853915-1854923 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.22 %
Coverage:
62.22 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Pou5f1
Parental gene aliases:
No gene alias available
Parental gene description:
POU domain, class 5, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101893]

Genomic region (view in browser)





>retro_mputfur_96
ATGGCCGGAAACAGGCCCTCAGACTTCTCCCCACTGCCAGGCAGTGGTAGGGGCGGGCCC
AGAGGGCCAATGCCAGTGCGGGTTGGTGCTCCGATCTGGTTGAGTGCCCAGGCCGTTCCC
AGCATGCTGATGATCCGACCAGGGATCAGCCCAGGCCCTGAGGGGTGGGAGGTGCCCCTG
GGTCCACGACCCTACGGATTCTACAGTGGGATGGCACCCCACAGGCCCAGGGTCGGAGCT
GGTGAGGCTGGGCCCCGGTTCCGGAGCCCCTCGGAGGGCGCCTTCCGGAGACCCTACATG
GTCCTGCAATGCAACCCAAGTTTGGTGCTGCCAGAGGACGTCTCGAAGGTAGAGAAAGAG
ATGGAGCAGCTGGCCAAAGAGCTGAGGCAAAAGAGGATGGCCCTGGGGTATTCACAGGCC
GACGTGGGGTTCGCCATGGGGGCTCTTTTTGGAAGAGTGCTTAGCCAGACAACCATCTGC
CGCTTCGAGTCCCAGCAGCTCAGCCTCGCCAACATGTGGAAGCTGCGGCCACTACTGAAA
ATGTGGCTGGAGGAGGTGGACACCAAGAACTTTCTGGGCATACGCAAAATGGAGATGATC
CTGCGGCAGGCTCGGAAGCAGAGACGGGCAAACAGGGAGAATCGCATCCGAAACAACCTG
GAGCAACTCTTCTTGCAGTGCCCGAAGCCTACACCCCAGCAAATCAGCTGCATCGCTGAC
CAGCTCCGGCTGCAGAAGGAGCTGGTCCAAGTTTGGTTCCATAACCGGATCAAGATGGAT
CGTCAGCCAACCATTGATTTCTCCCCACCGGCGGATGTGGGGGCAGCCGGGCCTCCTTTC
CCAGGGGGACCAGTGTGCTTTCCCCTGGCATCAGGGATCCATTTTGGTGCCCCGCACTAC
GAAGAGCCCTACTTTATACCCATGTATTCCCCTACCCCTTTCCCTGTGTCAGGGACCTTC
CTCTCTGCCCGAGTCAACGCTCAGGGCCACCCCAGGCTTTCAAACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QDIKALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLV-QARKRKRT
.D.....K..EQ.AK.L.QKR..LGY.QADVG...G.LFG.V.SQTTICRFE..QLS..NM.KLRPLL..W.EE.D...N...I.K.E....QARK..R.
Retrocopy
EDVSKVEKEMEQLAKELRQKRMALGYSQADVGFAMGALFGRVLSQTTICRFESQQLSLANMWKLRPLLKMWLEEVD-TKNFLGIRKMEMILRQARKQRRA


Parental protein
SIENRVRGNLENMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYSQREDFEAAGSPFSGAPVSFPLAPGPHFGTPGYGGPHFTTLYS
..ENR.R.NLE..FLQCPKPT.QQIS.IA.QL.L.K..V.VWF.NR.........D.S...D..AAG.PF.G.PV.FPLA.G.HFG.P.Y..P.F...YS
Retrocopy
NRENRIRNNLEQLFLQCPKPTPQQISCIADQLRLQKELVQVWFHNRIKMDRQPTIDFSPPADVGAAGPPFPGGPVCFPLASGIHFGAPHYEEPYFIPMYS


Parental protein
SVPFPEGEGFPSVSVTTLGSPMHSN
..PFP....F.S..V...G.P..SN
Retrocopy
PTPFPVSGTFLSARVNAQGHPRLSN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide