RetrogeneDB ID:
retro_mputfur_964
Organism:
Location:
GL896982.1:7898601-7899075 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
78.62 %
Coverage:
95.78 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PLA2G12A
Parental gene aliases:
No gene alias available
Parental gene description:
phospholipase A2, group XIIA [Source:HGNC Symbol;Acc:18554]

Genomic region (view in browser)





>retro_mputfur_964
ATGGCCGTCCTTCCGCTGCCCGCGCTCGCCCTTGTGATCCTCCTCTTTGTGTCCACCGCT
CTCAGGTGCCAGGAGCAGGCCCAGACCACCTACTGGCGGGCCACCCTGAAGACCATCCAG
AACGGCGTTCACAAGGTAGACATGTAACTGAACGCCGCTTGGGACCTTCTGGGAGGTGAG
GATGGGCTCTGCCAGTACAAGTGCAATAAGGGGTCTAAGCCTTTCCCGGGTTACGATTAT
AACCCCTCCCTGAATGGATGTGGCTCTCCACTGTTTGGTGTTCACCTTAATATTGGCATC
CCTTCCCTGACAAAGTGCTGTAACCAACACGGCAGGTGCTATAAGACCCACAGCAAAAGC
GAGAACGACTGCAATGAGGAATTCCAGTCTTCCCTCTCTAAGATCCGCCGGGATGTGCAG
AAGACACCAGGATTGGCTCAGTACATTCAGGCCTGTGAAACCACAGCAGAGCTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MALLPRHALAFVLLLFVPAALRCQEQAQTTDWRATLKTIRNGVHKIDTYLNAALDLLGGEDGLCQYKCNDGSKPFPRYGYKPSPPNGCGSPLFGVHLNIG
MA.LP..ALA.V.LLFV..ALRCQEQAQTT.WRATLKTI.NGVHK.D..LNAA.DLLGGEDGLCQYKCN.GSKPFP.Y.Y.PS..NGCGSPLFGVHLNIG
Retrocopy
MAVLPLPALALVILLFVSTALRCQEQAQTTYWRATLKTIQNGVHKVDM*LNAAWDLLGGEDGLCQYKCNKGSKPFPGYDYNPS-LNGCGSPLFGVHLNIG


Parental protein
IPSLTKCCNQHDRCYETCGKSKNDCDEEFQYCLSKICRDVQKTLGLAQHVQACENPVEL
IPSLTKCCNQH.RCY.T..KS.NDC.EEFQ..LSKI.RDVQKT.GLAQ..QACE...EL
Retrocopy
IPSLTKCCNQHGRCYKTHSKSENDCNEEFQSSLSKIRRDVQKTPGLAQYIQACETTAEL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide