RetrogeneDB ID:
retro_mputfur_965
Organism:
Location:
GL896982.1:263448-263999 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.89 %
Coverage:
86.38 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
FBXO27
Parental gene aliases:
No gene alias available
Parental gene description:
F-box protein 27 [Source:HGNC Symbol;Acc:18753]

Genomic region (view in browser)





>retro_mputfur_965
CTCCTGAGCCGCTTCTGCAAGCTCCGACAGTTCGGGCGCAGCCTCCTCCTCAATCCCTGC
GGCCAGGAAGGCCTCCAGGGTTGGACGGTGCAGCACGGTGGGGACGGCTGGGTGGTGGAG
GTAAACCTGACACAGGTGCCCGGGGCCCCCTCGCAGAACTGCTTTGTGTCTTCCTACAAG
TGGTGTAGCAAAAAGCAGGTCTTGGACCTGGTGGAGGAGGGTTTGTGGCCAGAGCTTCTA
GATAGCGGCAAGATTGAGATCTGTGTCTCTGGTGGGGAGCCCGAGACGACTATGGTTGTG
TGTACCGACTCCTTGTCCAGCTTCTAGATGCCAGGCTGAACGTCCTGGATGAATTCTCTT
CCTCCCCGGATCCCGTCCAGCAGGGGAACAACCACTTCTGCTTTCAGGTCACCCACGTGT
TCTCCAACATCAAGACGGGCATGCATGCGCTTTGGGTCTTTCAAACACTGGGGCCAGGAC
ATGCAGTTCTGGGCTGGCACTATGGAGCCTGTGTCACCAACTCCAGTGTGGTCGTGCGGG
CCTGACTGTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LLGRFCERRPIGRNLIRNPCGQEGLRKWMVQHGGDGWVVEVNRSTVPGAPSQTCFVSSFSWCRKKQVLDLEEEGLWPELLDSGKIEICVSD-WWGARHDS
LL.RFC..R..GR.L..NPCGQEGL..W.VQHGGDGWVVEVN...VPGAPSQ.CFVSS..WC.KKQVLDL.EEGLWPELLDSGKIEICVS..W.GAR.D.
Retrocopy
LLSRFCKLRQFGRSLLLNPCGQEGLQGWTVQHGGDGWVVEVNLTQVPGAPSQNCFVSSYKWCSKKQVLDLVEEGLWPELLDSGKIEICVSG/W-GARDDY


Parental protein
GCMYRLLVQLLDANQTVLDKFSAMPVPIQQWNNNVCFQVTHVFSNIKMGVRFV-SFEHWGQDTQFWAGHYGARVTNSSVVVRAQLS
GC.YRLLVQLLDA...VLD.FS..P.P.QQ.NN..CFQVTHVFSNIK.G......F...G........HYGA.VTNSSVVVRA.LS
Retrocopy
GCVYRLLVQLLDARLNVLDEFSSSPDPVQQGNNHFCFQVTHVFSNIKTGMHALWVFQTLGPGHAVLGWHYGACVTNSSVVVRA*LS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide