RetrogeneDB ID:
retro_mputfur_967
Organism:
Location:
GL896982.1:2425588-2426029 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
68.92 %
Coverage:
84.57 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
TPT1
Parental gene aliases:
No gene alias available
Parental gene description:
tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]

Genomic region (view in browser)





>retro_mputfur_967
ATGATCATCTACTGGAAATTCATCAACCATGATGAGATGTTCTCCAACATCTACAAGATT
CGGGAGATCAGGGACGGACTGTGCGTGGAGATGGAGGAGAAGATGGCCAGCAGGACAGAG
GGTACCACGGATGACTTGCTCATCAGTGGAAATGCCTCTGCCGAAGGCCCAGAGGGTGAA
GGTGCTGAAAGCACAGCCATCGTTGTTGATAATGTCATGAACCATCACTTGCAGGAAACC
AGCTTCACAGAAGAAGCCTACAAGAAGTACATCAATGATGGCCTGAAATCAGTCAAAGGC
AAACTTGAAGAAGAGAAGCCAGAAAGAATAAATCCTTTTATGACAGGGGCTGCAGAATTA
ATCAAGCATGTCCGCACTAGTTTCATAAATGACTAGTTCTTTACTGGAATCTGCTGTGAC
CCCAAATAATTATTTTCTTTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIK
MIIY...I.HDEMFS.IYKIREI.DGLC.E.E.KM.SRTEG..DD.LI.GNASAEGPEGEG.EST.I..VD.VMNHHLQETSFT.EAYKKYI.D..KS.K
Retrocopy
MIIYWKFINHDEMFSNIYKIREIRDGLCVEMEEKMASRTEGTTDDLLISGNASAEGPEGEGAESTAIV-VDNVMNHHLQETSFTEEAYKKYINDGLKSVK


Parental protein
GKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVAL
GKLEE..PER..PFMTGAAE.IKH....F.N..FF.G....P.....L
Retrocopy
GKLEEEKPERINPFMTGAAELIKHVRTSFIND*FFTGICCDPK*LFSL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide