RetrogeneDB ID:
retro_mputfur_972
Organism:
Location:
GL896982.1:8255661-8256050 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.66 %
Coverage:
64.56 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_972
GAGAAGGTAGTTCATAGACTGGCTACAGCAGATGATAAAAAAATTTCAGCTCTCCTTAAA
GAAGTTGGGGCAAACGATATTTCTGGTATTGAAAAGGTGAATATGTTCACAACCCAAAGA
CAGCAATCCACTTTAACAACCCTGGAGTTCAGGCATCTCGGCAGCAAACACTTAGAGGCC
ATGCTAAGACAAAGCAGCTGACAGAAATGCTAACCAGTATCTTAAGCCAACTTGGTGCAG
ACAGTCTAACTCCTTGAAGAAGACTGGCTGAAGCTCTACCCACACAATCTGTGGATGGAA
AAGTATCACTTACTACCAGGAAGGATGATGATGATGAAATTCCAAACCTTACAGAGATTT
TTGATGAGGTTTCCAAGAATAAAGCAAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQG-TVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQ
.KVVHR.ATADDKK....LK..G.N.ISGIE.VNMFT.Q..T.IHFNNP.VQ...A....T..GHA.TKQLTEML.SIL.QLGADSLT..RRLAEALP.Q
Retrocopy
EKVVHRLATADDKKISALLKEVGANDISGIEKVNMFTTQR/TAIHFNNPGVQ---ASRQQTLRGHAKTKQLTEMLTSILSQLGADSLTP*RRLAEALPTQ


Parental protein
SVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
SVDGK..L.T..DDDDE.P.L.E.FDE.SKN.AN
Retrocopy
SVDGKVSLTTRKDDDDEIPNLTEIFDEVSKNKAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide