RetrogeneDB ID:
retro_mputfur_973
Organism:
Location:
GL896983.1:137590-138621 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.57 %
Coverage:
87.69 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_973
ATGAAAAAGAAAAAGGCTCATATCAATATTGCCATCCTTGGACACAAGGATTTGAGCAAG
TTTATCCCTATTGGTGATCTGATCTACAAATGTGATGGGATCAACAGAAGGACTACTGTA
AAATTTGAGAAGGAAGCTGTTGAGATGGGAAAGGGCTGCTTCAAGTATGACTGGGTCTTG
GATAAACTGAAAATTGAATGTGAACATGGTATCAACATTGATATCTCCCTCTGGAAATTT
GAAAACAGCAAGTATGATGTGACCATCATTGATGCCTCAGGACACAGAGACTTTATCAAA
AACGTGATTACAGGCACGTCTCAGGCTGAATGTGATGTCCTGATTGCTGCTGCTGATGTT
GTGAATTTGAAGCAGGTCTCCAAGAATGGTAAGACCTGTGAACATGCCCTTCTGGCTTAC
ACACTGGATGTGAAACAACTAATTATTGGTGTTAACAGTATTGATTCAACTGAGCCACCC
TACAGCTAGAAGAGATATAAGGAAATTGTTAAGGAAGTCAGCACCTACATTAAGACAATT
GGCTGCAACCCTGACACCGTAGCATCTGTACTAATTTCTGGTTGGAATGGTGACAACATG
CTGGAGACAAATACTAACATGCCTTGGTTCAATGGTTGGAAATTTGCCTATAAAGGTGGC
AATGCCAGTGGAACCATGCTGCTCAAAGCTCTGAATTGCATTCTGCCATCAACTCATCCA
GCTGAAAAGCCCTTGTATCCACTTCTCTAGGACATCTACAAAATTGGTGGTATTGGTACT
GCCTGTGTGGTTTGAGTGGAGACTGGTGTTCTTAAACCCAGCCTGGTGTTCACCTTTGCA
CCAGTCAGTGCTAAAACTGTAGTCAAGTGTGTTGAAATGTACCATTAAGCTTGAGTGAGG
CTGTTTGTGGGGACAATGACAAGAACCCAACTGTCAAAGATATTCATCATGGTAATGTGG
TTGATGACAGCAAAAATGACCCACCAATGGAAGCATCTGGCTTCACAGCTCAGGTGATTA
TCCTGAACCAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK
M.K.K.HINI...GH.D..K....G.LIYKC.GI..RT..KFEKEA.EMGKG.FKY.WVLDKLK.E.E.GI.IDISLWKFE.SKY.VTIIDA.GHRDFIK
Retrocopy
MKKKKAHINIAILGHKDLSKFIPIGDLIYKCDGINRRTTVKFEKEAVEMGKGCFKYDWVLDKLKIECEHGINIDISLWKFENSKYDVTIIDASGHRDFIK


Parental protein
NMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN
N.ITGTSQA.C.VLI.AA.V.......SKNG.T.EHALLAYTL.VKQLI.GVN..DSTEPPYS.KRY.EIVKEVSTYIK.IG.NPDTVA.V.ISGWNGDN
Retrocopy
NVITGTSQAECDVLIAAADVVNLKQ-VSKNGKTCEHALLAYTLDVKQLIIGVNSIDSTEPPYS*KRYKEIVKEVSTYIKTIGCNPDTVASVLISGWNGDN


Parental protein
MLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEA-L
MLE...NMPWF.GWK...K.GNASGT.LL.AL.CILP.T.P..KPL...L.D.YKIGGIGT..V..VETGVLKP..V.TFAPV...T.VK.VEM.H.A.L
Retrocopy
MLETNTNMPWFNGWKFAYKGGNASGTMLLKALNCILPSTHPAEKPLYPLL*DIYKIGGIGTACVV*VETGVLKPSLVFTFAPVSAKTVVKCVEMYH*A/L


Parental protein
SEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNH
SEA..GD....N.KN..VKD...GNV..DSKNDPPMEA.GFTAQVIILNH
Retrocopy
SEAVCGD----NDKNPTVKDIHHGNVVDDSKNDPPMEASGFTAQVIILNH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide