RetrogeneDB ID:
retro_mputfur_975
Organism:
Location:
GL896983.1:3269213-3269749 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.11 %
Coverage:
87.75 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
STX8
Parental gene aliases:
No gene alias available
Parental gene description:
syntaxin 8 [Source:HGNC Symbol;Acc:11443]

Genomic region (view in browser)





>retro_mputfur_975
GCCCCGGACCCCTGGTTCTCCACATACGATTCTACCTGCCAAATTGCACAAGAGATTGCC
GAGAAAATCCAACAGCAAAATCAGTATGAAAGAAATGGTGAAAATACAATCAGGCTTACC
GTGACCATCAGAACTTTGTTGCAGAATCAGAAGGACAAGATCACCCTTTTGAAGGACCTG
TTGCTAAGAGCTGTGTCAACACATCAGATCTCCAGCTTGAAGGAGACTGAAGACAGAACC
TGCTGGATGAACTTGTAACTTGAGAGAGACTACTTGTGGCATCCTTTAAGAACGAGGGTG
CAGAACCAGATCTCATCAGGTCCAGCCTGATGCCTGGAGGGGCTAAGCAAGGAATTCCCA
ACCCTTGGCTCTTTGAGGAGCTAGAAGAGACCAGAGGTTTGGGTTCTGATGAACTCTGGC
AACAGCAGCAGAAAATTATCCAAGAACAGGATGCAGGCCTGGATGCCCTATCCTCTATCA
TCAGTCGGCAGAAACAGATGGGGAAGGAAATTGGGAATGAACTGGATGAACAAAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SPAGSFSTYDSTCQIAQEIAEKIQQQNQYERNGENTIRLTVTIRTLLQNLKDKIALLKDLLLRAVSTHQIT-QLEGDRRQNLLDELVTRERLLVASFKNE
.P...FSTYDSTCQIAQEIAEKIQQQNQYERNGENTIRLTVTIRTLLQN.KDKI.LLKDLLLRAVSTHQI..QLEGD.RQNLLDELVT.ERLLVASFKNE
Retrocopy
APDPWFSTYDSTCQIAQEIAEKIQQQNQYERNGENTIRLTVTIRTLLQNQKDKITLLKDLLLRAVSTHQIS/QLEGD*RQNLLDELVT*ERLLVASFKNE


Parental protein
GAEPDLIRSSLMTGGAKRGVPNPWLFEEPEETRGLGFDELRQQQQKIIQEQDAGLDALSSIISRQKQMGKEIGNELDEQN
GAEPDLIRSSLM.GGAK.G.PNPWLFEE.EETRGLG.DEL.QQQQKIIQEQDAGLDALSSIISRQKQMGKEIGNELDEQN
Retrocopy
GAEPDLIRSSLMPGGAKQGIPNPWLFEELEETRGLGSDELWQQQQKIIQEQDAGLDALSSIISRQKQMGKEIGNELDEQN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide