RetrogeneDB ID:
retro_mputfur_98
Organism:
Location:
GL896959.1:4114588-4115134 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.37 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
MCTS1
Parental gene aliases:
No gene alias available
Parental gene description:
malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357]

Genomic region (view in browser)





>retro_mputfur_98
ATGTTCAAGAAGTTCGACGAGAAGGAGAACGTGTCCAACTGCATCCAGCTGAAGACCTCC
GTCATCAAGGGGATCAAGAACCAGCTGAGCGAGCAGTTTCCGGGCATCGAGCCGTGGCTG
AACCAGATCCTGCCCAAGAAGGACCCGGTGAAGATCGTGCGCTGCCACGAGCACATCGAG
ATCCTGACGGTCAGCGGGGAGCTGCTGTTCTTCCGGCAGCGCGAGGGGCCTTTCTACCCG
ACGCTGCGGCTGCTGCACCGGTTCCCCTTCGTGCTGCCGCACCAGCAGGTGGACAAGGGC
GCCATCAAGTTTGTGCTCAGCGGGGCCAACATCATGTGCCCCGGCCTGACGTCCCCGGGC
GCGCAGCTGTACCCCGCCGCCGTGGACACGGTGGTGGCCGTCATGGCCGAGGGCAAGCAG
CACGCGCTGTGCGTCGGCGTCATGCGCATGTCGGCCGAGGACATCGAGAAGGTCAACAAG
GGCATCGGCATCGAGAACATCCACTACCTCAACGACGGGCTGTGGCACATGAAGACGTAC
AAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHVEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKG
MFKKFDEKENVSNCIQLKTSVIKGIKNQL.EQFPGIEPWLNQI.PKKDPVKIVRCHEH.EILTV.GELLFFRQREGPFYPTLRLLH..PF.LPHQQVDKG
Retrocopy
MFKKFDEKENVSNCIQLKTSVIKGIKNQLSEQFPGIEPWLNQILPKKDPVKIVRCHEHIEILTVSGELLFFRQREGPFYPTLRLLHRFPFVLPHQQVDKG


Parental protein
AIKFVLSGANIMCPGLTSPGAKLYPAVVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK
AIKFVLSGANIMCPGLTSPGA.LYPA.VDT.VA.MAEGKQHALCVGVM.MSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK
Retrocopy
AIKFVLSGANIMCPGLTSPGAQLYPAAVDTVVAVMAEGKQHALCVGVMRMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide