RetrogeneDB ID:
retro_mputfur_980
Organism:
Location:
GL896983.1:6516281-6516688 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
80.29 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL27
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]

Genomic region (view in browser)





>retro_mputfur_980
ATGGGCAAGTTCATAAAACCTGGGAAGGTGGTGCTGGTCCTAGCTGGACAGTACTTTTGA
CACAAAGTGGTCATCGTGAAGAACATTGATGATGGCACCTTAGACTGTCCCTACGGCCAT
GCTCAGGTGGCTGGAGTGGACCGCTATCCCTGCAAAGTGACAGCTGCCATGGGCAAGAAG
AAATTGCCAAGAGGTCAAAGATCAAGTCTTCTGCGAATGTTTATAACTACAATCATCCCA
TGCCCACGAGGTACTCTGTGGATATCCCCTTGGACAAAATGGTCATCAACAAGGATGTCT
TCAGAGACCCTGCTCTTCAATGCAAGGCCCTATGAGAGGCCAAGGTCAAGTTCGAGGGGA
CGTACAAGACCAGCAAGAATAAATGGTTCTTCCAGAAGTTGCAATTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKK-IAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKD
MGKF.KPGKVVLVLAG.Y...K.VIVKNIDDGT.D.PY.HA.VAG.DRYP.KVTAAMGKKK.IAKRSKIKS...VYNYNH.MPTRYSVDIPLDK.V.NKD
Retrocopy
MGKFIKPGKVVLVLAGQYF*HKVVIVKNIDDGTLDCPYGHAQVAGVDRYPCKVTAAMGKKK/IAKRSKIKSSANVYNYNHPMPTRYSVDIPLDKMVINKD


Parental protein
VFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF
VFRDPAL..KA..EAKVKFE..YKT.KNKWFFQKL.F
Retrocopy
VFRDPALQCKAL*EAKVKFEGTYKTSKNKWFFQKLQF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide