RetrogeneDB ID:
retro_mputfur_985
Organism:
Location:
GL896985.1:5606619-5606918 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.41 %
Coverage:
62.11 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS16
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]

Genomic region (view in browser)





>retro_mputfur_985
TTGCAACATAAGCTACTAGAACCAGCTCTGCTTTGGCACAAGGAGCAGTTTTCCAGGGTG
GACATCTGTGACTGAGTAAAGGGGGGTGGTCATGTGACCCTGGCTTATGCAATCCACCTG
TCCATCTCCAAAGCCCTGGTGCTGTATTATCAGAAATAGTGGATGAGGCTTCCAAGAAGC
ACAAGAAAAACATTCTCCTCCAGTACAACCTGCCCGTGCTGATAGCTGAACTCCTGCCCT
GTGAATATGAAGAGTTTGGCAATCCTGGTACTGGTGCTTGCTACCAGAAAGCCCACCAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQK-YVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSY
LQ.KLLEP.LL..KE.F..VDI...VKGGGHV...YAI..SISKALV.YYQK..VDEASKK..K.IL.QY....L.A....CE...FG.PG..A.YQK..
Retrocopy
LQHKLLEPALLWHKEQFSRVDICD*VKGGGHVTLAYAIHLSISKALVLYYQK/IVDEASKKHKKNILLQYNLPVLIAELLPCEYEEFGNPGTGACYQKAH


Parental protein
R
.
Retrocopy
Q


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide