RetrogeneDB ID:
retro_mputfur_986
Organism:
Location:
GL896985.1:7119767-7120141 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.29 %
Coverage:
59.62 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS8
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]

Genomic region (view in browser)





>retro_mputfur_986
ATACACACAGTTCCAATCTGGGGAGGTAATAAGAAGTACACTGCTTGGGGGCTGGATGTG
GGGAACTTCTTGTGGGGCTCTGAGTGTTGGAAGAAGCAAACAGGAATTACTGATATTATC
TACAAAGTACCCAACAGTGAATGAACAGTCCACACCAAGACCCTGGTGAGGAACGGTACC
GTGCTCATTGACAGCAGGCCATCCTGACCATGGTATGAGTTCCACTATGTACTACCTCTG
GGCTTAAGAAGGGGGCTAAGTTGACACCTAAGGAGGAAGAGATTTTAAACAAAAAAGAAT
CAAAGAAAATTCGGAAGAAACATAATGGAAGGAAAAAGCAAGCCACAATCAGCAGTTCCC
TAAGAGCAGGCTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNE-LVRTKTLVKNCIVLIDSTPYRQWYESHYALPL-GRKKGAKLTPEEEEILNKK
IHTV...GGNKKY.A..LDVGNF.WGSEC....T.I.D..Y...N.E..V.TKTLV.N..VLIDS.P...WYE.HY.LPL.G.KKGAKLTP.EEEILNKK
Retrocopy
IHTVPIWGGNKKYTAWGLDVGNFLWGSECWKKQTGITDIIYKVPNSE*TVHTKTLVRNGTVLIDSRPS*PWYEFHYVLPL/GLKKGAKLTPKEEEILNKK


Parental protein
RSKKIQKKYDERKKNAKISSLLEEQF
.SKKI.KK...RKK.A.ISS.L...F
Retrocopy
ESKKIRKKHNGRKKQATISSSLRAGF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide