RetrogeneDB ID:
retro_mputfur_989
Organism:
Location:
GL896986.1:7739160-7739503 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.35 %
Coverage:
54.29 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
HMGB2
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group box 2 [Source:HGNC Symbol;Acc:5000]

Genomic region (view in browser)





>retro_mputfur_989
ATGGGTAGAAGAGATCCTAAGAAGTTGAGAGGCTAAATGTCATCATATGCATTCTTTGTG
CAAACTTTCTGAAAGGAGCTCGAGATGAAGCACCCAGATGCTTGAGTCAGTTTCTCAGAT
ATGTCTAAGAAGTCCTCAGAGAGGTGGAGGGCCATGTCTGCTAAAGAGAAAGGAAAATTT
GAAGACATGACAAAGGTGGACAAGGCCCATTATGAAAGACAAATGAAAACTTACATCCCC
CTTAAAGGGGAAACAGAAAAAGAAGTTCAAGGATCCCAGTGCACCCAACAGGTCTCCTTT
GGCCTTTTTCTTGTTTTGTTCTGAGTATTGGCCCAGAATCAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGD-KKGKKKDPNAPKRPP
MG..DP.K.RG.MSSYAFFVQT...E...KHPD..V.F...SKK.SERW..MSAKEK.KFEDM.K.DKA.Y.R.MK.Y.P.KG...K.K.KDP.AP.R.P
Retrocopy
MGRRDPKKLRG*MSSYAFFVQTF*KELEMKHPDA*VSFSDMSKKSSERWRAMSAKEKGKFEDMTKVDKAHYERQMKTYIPLKGE\QKKKFKDPSAPNRSP


Parental protein
SAFFLFCSEHRPKIK
.AFFLFCSE..P.IK
Retrocopy
LAFFLFCSEYWPRIK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide