RetrogeneDB ID:
retro_mputfur_992
Organism:
Location:
GL896987.1:2710541-2711019 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.01 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_992
ATGACCAACACAAAGGGAAAGAAGAGAGACACCCACTATGTTCTCTCCACCTTTTAAAAA
ACATGGAGTTATTCCTTTAGCTACATACATACAGATCTATAAGAAAGGTGATGTTGTAGA
CATCAAGGGAATGGGCACTGTTAAAAAATGAACGCCCCACAAATGTTATCATGGCAACAC
TGGAAGGGTCTGTGCTGTTACCCAGCATGCTCTTGGCATTGTTGTAAACAAACAAGTTAA
AGGCAGGACTCTTGCCAAGAGAATTAATGGAAGTATTGAGCATATTAAGCACTCAAAGAG
CTGAGCTGGCTTCCTGAAGCACATGAAGGAAAATGATCAGAAAAAGAAGGAAGTCAAAGA
GAAAGATGCTTGGGTTCAACTCAAGGTCTAGAAAGCTCCACCCAGAGAAGCACACTTTGT
GAGAACCAATGGAAAGGAGCCTGAGCTGCTGGAACCCATTCCCTACAAATTCATGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTK-GK-RRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKH
MTNTK.GK.RR.T..MFS.PF.KHGV.PLATY..IYKKGD.VDIKGMGTV.K..PHKCYHG.TGRV..VTQHA.GIVVNKQVKG..LAKRIN..IEHIKH
Retrocopy
MTNTK/GK/RRETPTMFSPPFKKHGVIPLATYIQIYKKGDVVDIKGMGTVKK*TPHKCYHGNTGRVCAVTQHALGIVVNKQVKGRTLAKRINGSIEHIKH


Parental protein
SKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
SKS...FLK..KENDQKKKE.KEK..WVQLK...APPREAHFVRTNGKEPELLEPIPY.FMA
Retrocopy
SKS*AGFLKHMKENDQKKKEVKEKDAWVQLKV*KAPPREAHFVRTNGKEPELLEPIPYKFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide