RetrogeneDB ID:
retro_mputfur_996
Organism:
Location:
GL896988.1:1802774-1803296 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
94.83 %
Coverage:
85.29 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
STX8
Parental gene aliases:
No gene alias available
Parental gene description:
syntaxin 8 [Source:HGNC Symbol;Acc:11443]

Genomic region (view in browser)





>retro_mputfur_996
TTCTCCACATATGATTCTACCTGCCAAATTGCGCAAGAGATTGCCGAGAAAATCCAACAG
CAAAATCAGTATGAAAGAACTGGTGAAAATACAATCAGGCTTCCCGTGACCATCAGAACT
TTGTTGCAGAATCTGAAGGACAAGATTGCCCTTTTGAAGGACCTGCTGCTAAGAGCTGTG
TCAACACATCAGATAACACAGCTTGAAGGAGACCGAAGACAGAACCTGCTGGATGAACTT
CTAACTCCAGAGAGACTACTTGTGGCATCCTTTAAGAACGAGGGTACAGAACCAGATCTC
ATCAGGTCCAGCCTGATGACTGGAGGGGCTAAGCAAGGAGTCCCCAACCCTTGGCTCTTT
GAGGAGCCAGAGGAGACCAGAGGTTTGGGTTTTGATGAACTCCAGCAGCAGTAGCAGAAA
ATTATCCAAGAACAGGATGCAGGCCTGGATGCCCTATCCTCTATCATCAGTCAGCAGAAA
CAGATGGGGAAGGAAATTGGGAATGAACTGGATGAACAAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FSTYDSTCQIAQEIAEKIQQQNQYERNGENTIRLTVTIRTLLQNLKDKIALLKDLLLRAVSTHQITQLEGDRRQNLLDELVTRERLLVASFKNEGAEPDL
FSTYDSTCQIAQEIAEKIQQQNQYER.GENTIRL.VTIRTLLQNLKDKIALLKDLLLRAVSTHQITQLEGDRRQNLLDEL.T.ERLLVASFKNEG.EPDL
Retrocopy
FSTYDSTCQIAQEIAEKIQQQNQYERTGENTIRLPVTIRTLLQNLKDKIALLKDLLLRAVSTHQITQLEGDRRQNLLDELLTPERLLVASFKNEGTEPDL


Parental protein
IRSSLMTGGAKRGVPNPWLFEEPEETRGLGFDELRQQQQKIIQEQDAGLDALSSIISRQKQMGKEIGNELDEQN
IRSSLMTGGAK.GVPNPWLFEEPEETRGLGFDEL.QQ.QKIIQEQDAGLDALSSIIS.QKQMGKEIGNELDEQN
Retrocopy
IRSSLMTGGAKQGVPNPWLFEEPEETRGLGFDELQQQ*QKIIQEQDAGLDALSSIISQQKQMGKEIGNELDEQN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide