RetrogeneDB ID:
retro_olat_10
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1046:23312-24452 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.48 %
Coverage:
61.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SPAST
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_10
CTAGGAAGCAACTTCAAAACGGCGCGTGAGCAATTTATTGTTGATCAACAGAAAAAATGT
TCTCAGCAGTCGCGGGGAGCCCAGGCCTTTGGGATGACTGCAACTGTGAAGAAATCTCTG
GGCGCCAACAGGCCTCGGGGCACATTCTCAAAATTTGTGTCACCCATCCCACGACAGGAG
GATGAAGACAATGCGGCAAGTCAAAGTTCCACACAGGAACCTCCAATCCTGGACGAGCGT
CTGAAAAACTTTGAGCCAAAGATAATTGAGCTGATCATGAGTGAGATCATGGACCACGGG
CCTCCCATTGGCTGGGATGACATCGCGGGGCTGGAGTTTGCCAAGAACACCATCAAGGAG
ATAGTGGTCTGGCCAATGCTCCGACCTGATATCTTTACTGGTCTCAGAGGGCCCCCCAAA
GGTATCCTGTTGTTCGGGCCCCCAGGAACTGGAAAAACTCTTATTGGAAAATGCATTGCT
TGTCAGTCAGGCGCCACTTTCTTTAGCATCAGCGCTTCGTCCCTTACATCCAAGTGGGTG
GGTGAAGGAGAAAAAATGGTGCGAGCCCTATTTGCCATTGCTGGCTGTCACCAACCTGCC
GTCATCTTCATCGATGAAATCGACTCCCTGTTGTCCCAGCGTACAGACGGGGAGCACGAC
TCTTCGCGCAGGATCAAGACAGAGTTCTTGGTTCAACTGGACGGTGCAGCCACTGCATCA
GAGGACCGCATCCTGGTGGTGGGGGCCACTAACCGGCCCCAGGAGATTGATGAGGCCGCT
CGCAGACGTTTGGCCAAGCGGCTCTATATCCCCCTTCCTGAAGCAGCAGCCCGACGGCAG
ATAGTGTTCAACCTCATGGCCCAAGAGAAAAGCCAGTTGAGAGAGCCGGAGCTGGAAAGC
GTGGTGAGGGCCACAGAGGGCTTCTCCGGCGCTGACATGACGCAGCTCTGCAGGGAGGCA
GCTTTGGGACCAATTCGCAGCATCCAGCTTAGTGACATCGCCACCATCACTGCAGATCAG
GTGCGGCCGATTCTATTCAGTGACTTCCAGGAGGCTCTGAAGACTGTTCGACCCAGTGTC
TCTGCCAAAGACCTGGAGCTCTATGAGGAGTGGAATCAGACTTTTGGATGTGGACGCTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QQPKRDMKNFKNVDSKLANLIMNEIVDRGSSVCFDDIAGQARAKQALQEIVILPALRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS
Q.P.......KN...K...LIM.EI.D.G.....DDIAG...AK....EIV..P.LRP..FTGLR.P..G.LLFGPPG.GKT...K..A..S.ATFF.IS
Retrocopy
QEPPILDERLKNFEPKIIELIMSEIMDHGPPIGWDDIAGLEFAKNTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIACQSGATFFSIS


Parental protein
AASLTSKYVGEGEKLVRALFAVARELQPSVIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDEAILRRFAKRIYVS
A.SLTSK.VGEGEK.VRALFA.A...QP.VIFIDE.DSLL..R..GEHD.SRR.KTEFL...DG......DR.LV.GATNRPQE.DEA..RR.AKR.Y..
Retrocopy
ASSLTSKWVGEGEKMVRALFAIAGCHQPAVIFIDEIDSLLSQRTDGEHDSSRRIKTEFLVQLDGAATASEDRILVVGATNRPQEIDEAARRRLAKRLYIP


Parental protein
LPDEKTRFTLLKNLLGKHGNPLGTNDITYLSKVTAGFSGSDLTSLAKDAALGPIRELGPDQVRNMSASEVRNIQKKDFEDSLKRIKPTVSPATLDMYAKW
LP....R.....NL.......L...........T.GFSG.D.T.L...AALGPIR...........A..VR.I...DF...LK...P.VS...L..Y..W
Retrocopy
LPEAAARRQIVFNLMAQEKSQLREPELESVVRATEGFSGADMTQLCREAALGPIRSIQLSDIATITADQVRPILFSDFQEALKTVRPSVSAKDLELYEEW


Parental protein
NKEFG
N..FG
Retrocopy
NQTFG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide