RetrogeneDB ID:
retro_olat_11
Organism:
Medaka ( Oryzias_latipes )
Location:
23:20195678-20196422 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.01 %
Coverage:
91.63 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TNNT1 (2 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
troponin T type 1 (skeletal, slow) [Source:HGNC Symbol;Acc:11948]

Genomic region (view in browser)





>retro_olat_11
GACTTTGAAGAAAGTGTTGAGTATGAAGAGGAAGAGGTTGAGGAAAAGAATGAGGAAGAG
TCTAAATCCAAACACAAAACGGTTTATGTGCCTAACATGGTCCCTCCAAAGCTTCCCGAT
GGCGAGAAAGTGGATTTTGATGACCTCCACCGCAAGCGACTGGAGAAGGATTACAATGAC
CTGCAGAGTCTTATTGAGCTACATTTTTCCAGCCGTCAGAAGGAAGAGGAAGAGCTTATT
TCACTGCGCAACCGTATCGAAAGCCGCCGCGCCGACAGAGCTGAACAGCAGCGTGTCCGC
GCGGAGCAGGAGCGCGAGCGGCAAGCACGAGTGGCTGAGGAGAGGTCAAGGAGGGAGGAA
GAGGCAGCCAAGCAGCGCGCCGAAGAGGATGCCAAGAAAAAGATGATATTCTCCAACAAA
TCATTCGGTGGATACCTGCAGAAGGTCGACCAGAAGAAAGGCAAGAAGCTGACAGCTCGT
GAGGAGAAGAAGAAGGCCTTGATGGAGCGCAGGAAGCCGCTGAACATCGACCACCTGAAC
CAGGACAAGCTGCTAGAGAAAGCTCAGGAACTCTGGCAGTGGCTCTACCAGCTGCATTCT
GAGAAGTTTGATCTGGCTGAGAAGCTCAAGAAGCAAAAGTACGAAATCCACGTGCTTCGG
AACCGAGTCAGTGACCACCAGAGGTTCTCCAAAACTCTCAAGAGCTCTCGTGGAGCCAAG
AGCAAGCCTGGTTCCAGGAAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEDEEQGEEALCHLHPKEERPKPKPV-VPQIAAPKIPEGERVDFDDIHRKRMEKDLLELQTLIDVHFEQRKREEEELIGLKERIERRRAERAEQQRVRAE
EE..E..EE........E...K.K.V.VP....PK.P.GE.VDFDD.HRKR.EKD...LQ.LI..HF..R..EEEELI.L..RIE.RRA.RAEQQRVRAE
Retrocopy
EESVEYEEEEVEEKNEEESKSKHKTVYVPNMVPPKLPDGEKVDFDDLHRKRLEKDYNDLQSLIELHFSSRQKEEEELISLRNRIESRRADRAEQQRVRAE


Parental protein
KERDRQTRLAAERQRKEDEEAKKRAEDEAKKKKVLSNMGAHFGGFLAKVEQRRGKRQTGREIKKMTLAERRKPLAVENLREDGLREKAKELWEWIYELES
.ER.RQ.R.A.ER.R.E.E.AK.RAE..AKKK...SN....FGG.L.KV.Q..GK..T.RE.KK..L.ERRKPL....L..D.L.EKA.ELW.W.Y.L.S
Retrocopy
QERERQARVAEERSRREEEAAKQRAEEDAKKKMIFSNKS--FGGYLQKVDQKKGKKLTAREEKKKALMERRKPLNIDHLNQDKLLEKAQELWQWLYQLHS


Parental protein
EKFDLTEKMKRQKYEINVLLNRIQHAQKFKK
EKFDL.EK.K.QKYEI.VL.NR....Q.F.K
Retrocopy
EKFDLAEKLKKQKYEIHVLRNRVSDHQRFSK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide