RetrogeneDB ID:
retro_olat_12
Organism:
Medaka ( Oryzias_latipes )
Location:
5:11229730-11230321 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
LSM12 (2 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
LSM12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26407]

Genomic region (view in browser)





>retro_olat_12
ATGGCGGCTCCTGGACCGGGGGAGTATTTTAGTGTCGGGAGCCATGTCTCTTGCCTCACC
TGCCTAGGCCAACGTCTGCAAGGAGAAGTTGTCGCATTTGATTACCAGTCCAAGATGTTA
ACTTTGAAATGTGCTTCCTCCAGTGGCAAGCCAAACCTGCACGACGTCATCCTGATCAAC
TTAGCCTACGTTTCTGAAGTGGACATAATTAATGACCGCACTGAGACTCCTCCTCCACTA
GCATCACTGAATGTTAGCAAGCTTGCCAATCGAGCACGGACAGAAAAGGAGGACAAGCTG
TCCCAAGCCTATGCAATCAGTGCTGGGGTTTCTGTGGAGGGCCAACAGCTATTCCAGACT
ATTCATAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATTATTGTGATGGACGAT
GTCATTATCTCACCGCCTTACCAGGTCGAGAACTGCAAAGGCAAAGAGGGAAGCGCTTTA
AGTCATGTACGCAAAATAGTTGAGAAACATTTTAGAGACCTGGAAAGTCAGAAGTCCATG
CAACGTTCACAAGCACAGCAAACACAGAAGGACTCCACTTTATCATCTTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAPGPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYQSKMLTLKCASSSGKPNLHDVILINLAYVSEVDIINDRTETPPPLASLNVSKLANRARTEKEDKL
MAAPGPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYQSKMLTLKCASSSGKPNLHDVILINLAYVSEVDIINDRTETPPPLASLNVSKLANRARTEKEDKL
Retrocopy
MAAPGPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYQSKMLTLKCASSSGKPNLHDVILINLAYVSEVDIINDRTETPPPLASLNVSKLANRARTEKEDKL


Parental protein
SQAYAISAGVSVEGQQLFQTIHKTIKDCKWQEKNIIVMDDVIISPPYQVENCKGKEGSALSHVRKIVEKHFRDLESQKSMQRSQAQQTQKDSTLSS
SQAYAISAGVSVEGQQLFQTIHKTIKDCKWQEKNIIVMDDVIISPPYQVENCKGKEGSALSHVRKIVEKHFRDLESQKSMQRSQAQQTQKDSTLSS
Retrocopy
SQAYAISAGVSVEGQQLFQTIHKTIKDCKWQEKNIIVMDDVIISPPYQVENCKGKEGSALSHVRKIVEKHFRDLESQKSMQRSQAQQTQKDSTLSS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide