RetrogeneDB ID:
retro_olat_13
Organism:
Medaka ( Oryzias_latipes )
Location:
24:6096494-6097088 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.24 %
Coverage:
94.82 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RHOA
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_13
ATGGCAGACATACGGAAGAAGCTGGTGGTGGTCGGGGATGGCGCATGCGGGAAAACGTGT
CTGCTCATTGTGTTTAGCAGGGACGAGTTCCCCGAAGTGTACGTTCCGACTGTGTTTGAG
ACGTATGTGGCGGACATTGAGGTGGACAACAACAAGCAGGTCCAGCTTGCTTTGTGGGAC
ACGGCCGGACAGGAAGACTACGACCGCCTGCGCCCGCTCTCCTACCCGGACACTGATGTC
ATCCTCATGTGTTTCTCCGTGGACAGCCCCGACTCGCTGCAAAACATCCCGGAAAAGTGG
GTCCCCGAGGTGAAACACTTTTGCCCGAACGTGCCGATTATTCTGGTGGGCAACAAGAAG
GACCTGCGCAACGACGAAAACACCAAGAACGAGCTGTCTCGCTTGAAGCTGGAGCCCGTG
AAGGCGGAGGACGGACGCGCCATGGCGGCGCGTATCGGCGCCTATGACTATTTGGAGTGC
TCTGCCAAAACCAAAGAGGGGATCTGGGAGGTTTTTGAAACGGCAACGCGAGCGGCCTTG
CAAAAGCGGAGAACACCCGGAGATGGTTGTTTTAAATGCTGCGTTTTAATGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW
MA.IRKKLV.VGDGACGKTCLLIVFS.D.FPEVYVPTVFE.YVADIEVD..KQV.LALWDTAGQEDYDRLRPLSYPDTDVILMCFS.DSPDSL.NIPEKW
Retrocopy
MADIRKKLVVVGDGACGKTCLLIVFSRDEFPEVYVPTVFETYVADIEVDNNKQVQLALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLQNIPEKW


Parental protein
TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEDGRDMANRIGASGYMECSAKTKDGVREVFEMATRAALQARR
.PEVKHFCPNVPIILVGNKKDLRNDE.T..EL...K.EPVK.EDGR.MA.RIGA..Y.ECSAKTK.G..EVFE.ATRAALQ.RR
Retrocopy
VPEVKHFCPNVPIILVGNKKDLRNDENTKNELSRLKLEPVKAEDGRAMAARIGAYDYLECSAKTKEGIWEVFETATRAALQKRR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide