RetrogeneDB ID:
retro_olat_14
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold2516:2990-3638 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.74 %
Coverage:
71.89 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SCO1
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_14
AACTCTGGTGTCACAGTGAAGCTGCGGACCCGGCTGCTGGTGTCGCTGCTGTTTGGCGGC
GGGCTGCTTGGGGCGTGGGCGTACGTGTACTGGGAGAAGCAGCAGCGGCGGTGGCAGCAG
CGGACCGAGCAGCTCCGGAAGGTGGCTCTGGGCCAGGGCACCTTCAGCCTGGTCGACCAC
ACGGGCCGGCGGCGGACCAAGCAGGACTTCCTGGGCAGCTGGGTGCTGCTGTATTTTGGG
TTCACGCACTGCCCAGACATCTGCCCCGACGAGCTGGACAAGCTGAGCGCTGCGGTGGCA
GTTCTGGACCAGGACGCCTCGCTGCCCCCTGTCCAGCCCCTCTTCATCACCGTGGACCCG
GAGAGGGACGGCGTGCCGGCCTTGGCCCGCTACGTCAAGGACTTTCACCCGCGGCTGATC
GGCTTGACCGGTACCCCGGAGGAGGTGAAGCACGCGGGGCGGGACTACCGGGTGTACGCC
AGCCCCGGGCCCAAAGACCAGGACGGAGACTACATCGTGGACCACAGCATCCTGATCTAC
CTGCTGAGCCCCGATGGACTCTTCCTGGACTACTACAACCGCATGAAGAGCAGCGAGCAG
ATCGCCGACAGCGTCAGGAACCACATGAGGAGCTACCAGAGGCTCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAVTFAIGGALLGVMKYFKKEKEELLEKERNKSIGRPALG-GPFSLVDHNNKPTKSQDFLGQWVLLYFGFTHCPDICPDEIEKMIEVVDEIDKIQSLPNL
L.V....GG.LLG...Y...EK.......R.......ALG.G.FSLVDH.......QDFLG.WVLLYFGFTHCPDICPDE..K....V...D...SLP..
Retrocopy
LLVSLLFGGGLLGAWAYVYWEKQQRRWQQRTEQLRKVALGQGTFSLVDHTGRRRTKQDFLGSWVLLYFGFTHCPDICPDELDKLSAAVAVLDQDASLPPV


Parental protein
TPLLITIDPERDTPEAMAAYVKEFSPKLIGLTGSTAQIEEVSRAYRVYYSQGPKDEDNDYIVDHTIIMYLIGPDGEFVEYFGQNKRGVEISNSIAAHMRK
.PL.IT.DPERD...A.A.YVK.F.P.LIGLTG.........R.YRVY.S.GPKD.D.DYIVDH.I..YL..PDG.F..Y....K....I..S...HMR.
Retrocopy
QPLFITVDPERDGVPALARYVKDFHPRLIGLTGTPEEVKHAGRDYRVYASPGPKDQDGDYIVDHSILIYLLSPDGLFLDYYNRMKSSEQIADSVRNHMRS


Parental protein
HRK
...
Retrocopy
YQR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide