RetrogeneDB ID:
retro_olat_16
Organism:
Medaka ( Oryzias_latipes )
Location:
13:18141507-18142155 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.09 %
Coverage:
58.85 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
EF1-BETA
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_16
TTTGGTGACTTGAAGTCTCAAGAAGGCCTCAAAGCGCTTAATGATTTCCTGGCAGACAAA
AGCTACATGGAGGGCTTTGAAGCTTCCCAGGCAGATGCCGCTGTGTTCGATGCCATCCCC
TCTACTCCCACTCAGACTCTTCAGCACCTCTGGCGCTGGTACAACCACATCAAGTCTTTC
CAGACAGAGAGGGTCCGCCTCCCGGCTACCAAAACTCAGTTTGTACTCTTAAATGCCTGC
CCCTCCTCAGAGCACACCAGCGATGAAGACATAGACCTCTTTGGTTCTGAAGACGAGGCT
GAGAGCGCCGAGACGGCCAGGATCAAGGAGCAGCGCCTCGCTGAGTATGCAGCCAAAAAA
TCCAAGAAGCCAGCCCTCATCGCCAAGTCTTCCATCCTGCTGGATGTCAAGCCTTGGGAT
GATGAGACGGACATGTCCAAGCTGGAGGAGTGCGTTCGAAGTGTCAGGATGGACGGCCTG
CTGTGGGGGCAGTCCAAGCTGCTGCCAGTGGGCTACGGTATCAAGAAGCTCCAGATCGCC
TGCGTGGTGGAGGACGATAAAGTGGGCACGGATGTGCTGGAGGAGGCCATCACCGCCTTT
GAGGAATATGTTCAATCTGTGGACGTGGCTGCTTTCAACAAGATCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ASKDEDDDDIDLFGS-DEEEDTEAAKLKEQRLAEYAAKKAKKPALIAKSSILLDVKPWDDETDMAKLEECVRSIQMDGLVWGQSKLVPVGYGIKKLQISC
.S....D.DIDLFGS.DE.E..E.A..KEQRLAEYAAKK.KKPALIAKSSILLDVKPWDDETDM.KLEECVRS..MDGL.WGQSKL.PVGYGIKKLQI.C
Retrocopy
SSEHTSDEDIDLFGSEDEAESAETARIKEQRLAEYAAKKSKKPALIAKSSILLDVKPWDDETDMSKLEECVRSVRMDGLLWGQSKLLPVGYGIKKLQIAC


Parental protein
VVEDDKVGTDILEEQITAFEDYVQSMDVAAFNKI
VVEDDKVGTD.LEE.ITAFE.YVQS.DVAAFNKI
Retrocopy
VVEDDKVGTDVLEEAITAFEEYVQSVDVAAFNKI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide