RetrogeneDB ID:
retro_olat_2
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold625:10394-11363 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.26 %
Coverage:
98.54 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_2
ATGTCTTTTCTCCGGACGGCTTTGAACAGCTCCGTCATCATTCATCCTCCAGGCTTCTAC
ATCATCGGATTTGAGTCTTTACCATCTGTCAACATCTACTTCATCTTTCTAGCATTTGTT
TATGTGGTTACAGTGCTGTTTAACGGTTTGCTGATTATTGTTGTGGTTATTAATCCATCC
TTACACACTCCAAAATTTCTGGCTGTCATCAACCTTGCAGTGATTGATTTATGTCTAAAC
ACTTGCACTATTCCTGGTATGATAAAGATATTTTTGGTTAAAGATAATTTTATCCCATTC
AACTTGTGTTTGGTGCAAATGTTTATTTATTATGCATTTGCATCATTAGAGTCTTACGCC
CTCACTATACTTGCTTATGACAGGTTGGTGGCTATTTGTTTCCCTTTGCGCCAAAACTCC
ATCAACACAATGCGCAGCATGTGCTGCATCATCACCTTTACCTGGTCAATTTCTTTGGGG
GTCATGAGCTACATCACAAATTTGGTAACAAAACTGTCATTTTGTAACTCTGTCAGGGTG
TTTAGTTATTTTTGTGACTATGCACCCGTGTTCAGGCTTGCCTGTAATGATTATTCAATG
CAGTGGTTTGCAGGTTCCTTTTTGAGCATGCTGACCCTTGCAGGGCCTTTTGCTTTCATA
GTGCTGTCATACGTCAGCATCCTGGTGACTGTGTTCAGAATGAAGACTTTAGATCGGCGC
CTAAAAGCACTGGCTACTTGTGTGGAACACATCATCATTGTTGCAATCTTTTTTATTCCT
CTTCTTGTCATTTTCACAATTGGCTACCATTTGGGAGCAGTTAACCCAGATCATAGAGTT
CTAAGTCTGTCGATGGCCTCTTGCCTTCCACCTTGCATTAATCCTATTGTATATTCTTTG
AAAACTAAAGAGATCAAAACCCGAGCACTGACGCTTATTAAAAAAAATACTATTATTCCG
ACTAAATCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSFLRTALNSSVIIHPPGFYIIGFESLPSVNIYFIFLAIVYVVTVLFNGLLIIVVVINPSLHTPKFLAVINLAVIDLCLNTCTIPGMIKIFLVKDNFIPF
MSFLRTALNSSVIIHPPGFYIIGFESLPSVNIYFIFLA.VYVVTVLFNGLLIIVVVINPSLHTPKFLAVINLAVIDLCLNTCTIPGMIKIFLVKDNFIPF
Retrocopy
MSFLRTALNSSVIIHPPGFYIIGFESLPSVNIYFIFLAFVYVVTVLFNGLLIIVVVINPSLHTPKFLAVINLAVIDLCLNTCTIPGMIKIFLVKDNFIPF


Parental protein
NLCLVQMYFYYFFANSESYALTILAYDRLVAICFPLRQNSINTMRSMCCIITFTWCLVLGITTFSTSLMTKLSFCNSVRVFSYFCDYAPVFRLACNDYSM
NLCLVQM..YY.FA..ESYALTILAYDRLVAICFPLRQNSINTMRSMCCIITFTW...LG.....T.L.TKLSFCNSVRVFSYFCDYAPVFRLACNDYSM
Retrocopy
NLCLVQMFIYYAFASLESYALTILAYDRLVAICFPLRQNSINTMRSMCCIITFTWSISLGVMSYITNLVTKLSFCNSVRVFSYFCDYAPVFRLACNDYSM


Parental protein
QWFAASFLSMMTLVGPFAFIVLLLPSPCINPIVYSLKTKEIKTRALVLIRIKNTEVIQIFWIKFLFIMLL
QWFA.SFLSM.TL.GPFAFIVL...S......V...KT......AL............IF.I..L.I...
Retrocopy
QWFAGSFLSMLTLAGPFAFIVLSYVSILVT--VFRMKTLDRRLKALATC-VEHIIIVAIFFIPLLVIFTI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide