RetrogeneDB ID:
retro_olat_20
Organism:
Medaka ( Oryzias_latipes )
Location:
11:8080774-8081689 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.51 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_20
GAGGTGGCTGACACCTTCAATATGTCTCAGCGTCAAGTACAAAGAATAAGAAAAAGATTT
GAAGAGACTGAAGATGTTTTTGACAAGCCCAGGTCCGGCAGACCCCGCAAGACAACTGCC
CGGGAGGACCGTTTGTTGGTTCCAAAATCCAAGGCCAGCCTCTTTTCCACTGCAGCAGAG
CTCCACCAGGCCTGGTCAACTCAAGTCCCTGTGTCAACCAGAACAGTTTGTAGAATTCTG
TCTCAAAATGGCCTCCATGGTCGAATCAGTGCCCAGAAACCAGCACTAAACAAAAGGCAA
TTGAAAAAACGTGTGGCATTTGCCAAGGCCCACAGCTGCTAAAAGGATGGACGCTGGAAA
AGTGGCAGAAGGTGGATTTTTCAGATGAGTCTTCAGTTAAATTACATCACAGGAGACCAA
CTGGAGCCCACATGGACCCAAGATTCACCCAGAAAACAGTTAAGTTTGGTGGCGGAAAAA
TCATGGTCTGGGGTTACATCCAGTATGGGGGTGTGCGAAACATTTGCAGGGTGGAAGGCA
ATATCAATAGCCTAAAATATCAAGAAGTATTAGCTACCTCTTACATTCCCAACCATAAAA
GGGGTCAAATTCTGCAGCAGAATGGTGCTCCATCGCACACTTCCATCTCTACATCAAAGT
TCCTCAAGGCGAAGGAGATCAAGGTGCTCCAGGACTTGGCCAGCCCAGTCACCAGACATG
AACATCATTGAGCATGTCTGGGGTAGAATGAAAGAGGAAGCGTGGAAGACGAAATCAAAG
AATCTTGATGAACTCTGGGAGGCATGTAAAACTGCTTTCTTTGCTATTCCTGATGACTTC
ATCGATAAATTATATGAGTCATTGTCAAACCGCATGGATGCTGTCCTTCAAGCTCATGGA
AGTCATACAAGATAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EMSSLLNIPQSAVSSIRTTWKSLGTTATQPPSGRPGNLMERSQRMLKLRVQRETLLNLEDSLSRRVGAGEHLNGRTVCRVLSENGLHGPSSAQKPALNKR
E.....N..Q..V..IR............P.SGRP.....R..R.L........L......L............RTVCR.LS.NGLHG..SAQKPALNKR
Retrocopy
EVADTFNMSQRQVQRIRKRFEETEDVFDKPRSGRPRKTTAREDRLLVPK-SKASLFSTAAELHQAWSTQVPVSTRTVCRILSQNGLHGRISAQKPALNKR


Parental protein
QLKK-TCGICQGPEPAK--RMDAGKVADGGDESSVELHHRKPTGARMDSRFTQKTFKFGGRKIMVRGYILYGGVRNICRVEGNINSLKYQEVLATSSIPN
QLKK.TCGICQGP...K..........D..DESSV.LHHR.PTGA.MD.RFTQKT.KFGG.KIMV.GYI.YGGVRNICRVEGNINSLKYQEVLATS.IPN
Retrocopy
QLKK/TCGICQGPQLLKGWTLEKWQKVDFSDESSVKLHHRRPTGAHMDPRFTQKTVKFGGGKIMVWGYIQYGGVRNICRVEGNINSLKYQEVLATSYIPN


Parental protein
HKRGQILQQDGAPSHTSISTSKFLKAKKMKVLQDR-PAQSPDMNIIEHVWGRMKEGAWKTKPKNLDELWEAWKTAFFAIPDDFIHKLYESLSNRMDAVLQ
HKRGQILQQ.GAPSHTSISTSKFLKAK..KVLQD..PAQSPDMNIIEHVWGRMKE.AWKTK.KNLDELWEA.KTAFFAIPDDFI.KLYESLSNRMDAVLQ
Retrocopy
HKRGQILQQNGAPSHTSISTSKFLKAKEIKVLQDL\PAQSPDMNIIEHVWGRMKEEAWKTKSKNLDELWEACKTAFFAIPDDFIDKLYESLSNRMDAVLQ


Parental protein
APGSHTRY
A.GSHTRY
Retrocopy
AHGSHTRY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide