RetrogeneDB ID:
retro_olat_21
Organism:
Medaka ( Oryzias_latipes )
Location:
12:24804842-24806127 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.47 %
Coverage:
90.08 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_21
CAATCTCTTCCGGTAAACATTCCGGTGTCAACTTTCAACGTGATAAACAAAATGATAACT
CAATTTATATGGCAGCGAAAAAGACCCAGAATTAGATTAAAAACATTATTCTTGCCAAGA
AATAAGGGAGGTTTGGCTCTACCAAACCTAAACTTTTACTATTGGGCAGCTCAGTTGACA
GCGATCGTGGCCTGGATTAGAGAGGATGAGGAAGTAAAATGGATTAAAGTGGAACAAGGT
GAAACTAAAGGGGTGCGGCTGTCTACGCTTCCATTTACTGAACTAAAATCTGTCAACAAA
ATCAAAATTGGAAACAGTTGGATCAAACATACTCTAAAGATTTGGACGGTAGTTAGAAAA
AATGTTACTTGATACAGGGTCAATTTCCAGAGCAATGCCTATTGTTGGTAAAATAGATTT
TCCGCCTTCAACGTGGGATCCCACCTTTAAGACATGGGCCACTAAAGGCCTTATAACTCT
TAACCAGTTGTCCGATGTAACGGAACTTAATTCCTTTTCACAGCTTCAAGGACAATTTGG
CCTTCTGCCGAATGATTTTTATAAATATCTCCAAATCAGGCATTACATCATGAAGCACAA
AGAGCGAGACAGAATCAACAAATCCCAAACTGCATAGAACAATATTTTACTATAATCGCA
GAAAAAAACTTTCCAACGCATAAACATGTTTCCAACTTGTATAAGAGACTCTCAACTGCC
ACCAGACAGAATACATATAATATCAAAGAAAAATGGGAATTGGAATCTAACTGTTTAATA
GAAGATGAACAATAGGATAAATTGTGTGAGGACAGCCATATAGGAATTAATAGCCAACTA
TGGAAAGAGTTTGACTGGAAAATTAAAATGCGTTTTTTTCACACACCCCTGTTGATTTCT
AATTTTGCCAAGGGCTCATCCACAGCCTTATGTTGGAGGCAATGTGAAAAATTGGTGATC
ATACACATATTTTCTTTGATTGCCCAGTTATCTGTGAATTTTGGAAAGATATTAAGAGGG
AGATTGAAACTATTGTAAAACATGACATTCCTTTAAGTGCTCTGTCGTATCTGCTTGGTG
TATTTCCAAAAGACTTTGATGCTGATCAAATATATATAATGCGCATTTTACTACTGGTCG
CAAAAAAAGCCATAACAGGAAATTGGAAAAATGTAACATCACCTTCTGTAACTGAATGGA
AACAAAGTATCAAACACGTTTATTTGATGGAAAAATGACAGCATTGCTACAACTAAAATC
AGATGTCTTTGAACGTCGATGGCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QSLAVNIPVSTFNVLNKMITQFIRQQKRPRIRLKTLFLPKNKGGLAIP-LKFYYWAAQLTTIVAWIKEDEEVKWFKVEQGETKGVRLSTLPFTDLKSVNK
QSL.VNIPVSTFNV.NKMITQFI.Q.KRPRIRLKTLFLP.NKGGLA.P.L.FYYWAAQLT.IVAWI.EDEEVKW.KVEQGETKGVRLSTLPFT.LKSVNK
Retrocopy
QSLPVNIPVSTFNVINKMITQFIWQRKRPRIRLKTLFLPRNKGGLALPNLNFYYWAAQLTAIVAWIREDEEVKWIKVEQGETKGVRLSTLPFTELKSVNK


Parental protein
IKIGNNWIKHTLKIWTVVKK-MLLDTGSISRAMPIVGNIDFPPSMWDPTFKTWATKGLITLNQLFDGTELKSFSQLQRQFGLLPNDFYKYLQIRHYIMKH
IKIGN.WIKHTLKIWTVV.K.MLLDTGSISRAMPIVG.IDFPPS.WDPTFKTWATKGLITLNQL.D.TEL.SFSQLQ.QFGLLPNDFYKYLQIRHYIMKH
Retrocopy
IKIGNSWIKHTLKIWTVVRK\MLLDTGSISRAMPIVGKIDFPPSTWDPTFKTWATKGLITLNQLSDVTELNSFSQLQGQFGLLPNDFYKYLQIRHYIMKH


Parental protein
KERDRINKT-PNCIEQYFTTIAEKNFPTHKHVSNLYKSLSTATGQHTYNIKEKWELESNCIIEDEQWDKLCEDSHIGINSQLWKEFDWKIKMRFFFTHPC
KERDRINK..PNCIEQYFT.IAEKNFPTHKHVSNLYK.LSTAT.Q.TYNIKEKWELESNC.IEDEQ.DKLCEDSHIGINSQLWKEFDWKIKMR.FF..P.
Retrocopy
KERDRINKS/PNCIEQYFTIIAEKNFPTHKHVSNLYKRLSTATRQNTYNIKEKWELESNCLIEDEQ*DKLCEDSHIGINSQLWKEFDWKIKMR-FFHTPL


Parental protein
----FAEGSSTALCWRQCG-KIGDHTHIFFDCPAICEFWKDNKREIETIVNHDIPLSTLSYLLGGSPQRTSRMADQKYIMRILLLVANKTITGNWKNVTS
....FA.GSSTALCWRQC..KIGDHTHIFFDCP.ICEFWKD.KREIETIV.HDIPLS.LSYLLG..P......ADQ.YIMRILLLVA.K.ITGNWKNVTS
Retrocopy
LISNFAKGSSTALCWRQCE/KIGDHTHIFFDCPVICEFWKDIKREIETIVKHDIPLSALSYLLGVFPKDFD--ADQIYIMRILLLVAKKAITGNWKNVTS


Parental protein
PSVTEWKQRIKHVYLME-KTTALLQLKSDIFERRWH
PSVTEWKQ.IKHVYLME.K.TALLQLKSD.FERRWH
Retrocopy
PSVTEWKQSIKHVYLME/KMTALLQLKSDVFERRWH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide