RetrogeneDB ID:
retro_olat_27
Organism:
Medaka ( Oryzias_latipes )
Location:
15:28900932-28901379 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.33 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
OLA.27032
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_27
ATGGCTACTTTTTTATCAGTAAATGTCAACAAGAAGCGTGAAAATCTGTTCTTCATCCTC
CGGACACACAACACAAACCCTAAAAGTTTGGAAACTTTTGAAGAGCTCCGAAGTTTTGGG
AAGAACCGTGTTGCGCAGAAATGTCAGAGCCAGCAAAGGAGAAGGAAAACATTCCTGACG
AGTCTGCAGGAGGAAAACGGATTCCAAACGGAGGGAATGCTGCGAAAACCAGGGAGGACT
TTGAGTTGGCTGCCATTTACGTGTCAGATGCTCAGTACAACAGGAACATCTACTTTGACA
CTTCCCCTCAAGCTGTCAGGCTCTATCTGCTCTACCATCACTGGATCCTTAAGATGCTCC
TCTACTTCTTCATCGTGCTCAACTTGTCTCTGGCCATCTTTGAGGAGCCGGCTGTCCTCC
CGCTGCCCACGTGGGCCACCATGCTCG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MATFLSVNVNKKRENLFFILRTHNTTPKSLETFEELRSFGKNRVAQKCQSQQRRRKTFLTSLQEENGFQTEGMLRKPGRTLSWLPFTCQMLSTTGTSTLT
MATFLSVNVNKKRENLFFILRTHNT.PKSLETFEELRSFGKNRVAQKCQSQQRRRKTFLTSLQEENGFQTEGMLRKPGRTLSWLPFTCQMLSTTGTSTLT
Retrocopy
MATFLSVNVNKKRENLFFILRTHNTNPKSLETFEELRSFGKNRVAQKCQSQQRRRKTFLTSLQEENGFQTEGMLRKPGRTLSWLPFTCQMLSTTGTSTLT


Parental protein
LPLKLSGSICSTITGSLRCSSTSSSCSTCLWPSLRSRLSSRCPRGPPCS
LPLKLSGSICSTITGSLRCSSTSSSCSTCLWPSLRSRLSSRCPRGPPCS
Retrocopy
LPLKLSGSICSTITGSLRCSSTSSSCSTCLWPSLRSRLSSRCPRGPPCS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide