RetrogeneDB ID:
retro_olat_28
Organism:
Medaka ( Oryzias_latipes )
Location:
17:6984739-6985597 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
78.35 %
Coverage:
99.31 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_28
AGAAGAGTATTGTCCCAGGACATTAGAAACAAAATTATAGACAAACATGGTAAAGGTAAA
GGCTATAAAACCATCTCTAAGCAGCTTGAAGTTCCTGTGACCACAGTGGCACATATTATT
CAGAAGTTTCAGACCCACGGGACTGCAGCCAACCTCCCTGGATGTGGCAGGAAGAAGAAA
ATTGATGACAAATTGAGGAGACGGAGTTGGACCTGTATCCAAAGAGCCCAGAACAACCTC
CAAAGACATTAAAGGAGAACTCCTAGAGCAAAGTACATCAGTGTCAGATCGCACCATTCG
TGGTTGTTTGAGCCAGAGAAGAGTTCATGGTAGACGACAAAGGAGAACACCACTGTTGAA
AGGAAATCATAAAAAAGTGAGACTGGAATTTGCAAAAATGCATTTTGACAAGCCACAAAG
CTTCTGGGAAAATGTCCTTTGGACAGATGAGACAAAACTGGAGCTTTTTGGTAAGGCACA
TCAGCTCTATGTTGGTAGACTCAAAAATGAAGCATACAACCAAAAGAACACTGTCCCTAA
TGTGAAACATGGAGGAGGCTCAGTTCTGTTTTGGGGCTGCTTTGCTGCACAGGTTGTCTT
GAAGTTGTACAAGGTAAAATGAAATCTCAAGATCATCAAGGCATTCTGGATAGAAATCTG
CTGCCTAGTGTCAGAAAGCTTGGTCTCAGTCGCAGGTCATGGGTCTTCCAACAGGACAAC
GATCCAAAACACACAAACGAAAACCCCCAAGAATGGCTAAGAGAAAAGTGTTGGACTATT
CTGAAGTGGCCTTCTATGAGCCCAGATCTGAATCCCATTGAACATCTGTGGAAGGAGCTG
AAACATGCCATTTGGAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRELSQDISNKIIDKHRKAKGYKTTSKQLEVPATTVAHIIQKFKTHGTVANLPGCGRKMKIDDKLKRRI-VGTVSKEPSTTFKDIKGEFIDQGTSVSDRT
RR.LSQDI.NKIIDKH.K.KGYKT.SKQLEVP.TTVAHIIQKF.THGT.ANLPGCGRK.KI.D...RR..VG.VSKEP.TT.KDIKGE...Q.TSVSDRT
Retrocopy
RRVLSQDIRNKIIDKHGKGKGYKTISKQLEVPVTTVAHIIQKFQTHGTAANLPGCGRKKKI-DDKLRRR\VGPVSKEPRTTSKDIKGELLEQSTSVSDRT


Parental protein
ICRCLSQSYAFHHFCNDKKLLKGNNK--RLEFAKMHVDKPQRFWENVLWTDETKLELFGKAHQLYVGRLKNEAYNKNNTVPTVKHGGGSVLFW-GCFAAS
I..CLSQ............LLKGN.K..RLEFAKMH.DKPQ.FWENVLWTDETKLELFGKAHQLYVGRLKNEAYN..NTVP.VKHGGGSVLFW.G.....
Retrocopy
IRGCLSQRRVHGRRQRRTPLLKGNHKKVRLEFAKMHFDKPQSFWENVLWTDETKLELFGKAHQLYVGRLKNEAYNQKNTVPNVKHGGGSVLFW/GLLCCT


Parental protein
GTVCLEVVQGQMKSQDYQGILDRNVLPSVRKLGLSRRSWVLQQDIDPKHTAKKTQEWLREERWTILKWPSMSPDLNPIEHLWKELKHAIWR
G..CLEVVQG.MKSQD.QGILDRN.LPSVRKLGLSRRSWV.QQD.DPKHT....QEWLRE..WTILKWPSMSPDLNPIEHLWKELKHAIWR
Retrocopy
G--CLEVVQGKMKSQDHQGILDRNLLPSVRKLGLSRRSWVFQQDNDPKHTNENPQEWLREKCWTILKWPSMSPDLNPIEHLWKELKHAIWR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide