RetrogeneDB ID:
retro_olat_29
Organism:
Medaka ( Oryzias_latipes )
Location:
17:8891749-8893441 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
98.94 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GNL3L
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_29
ATGTCTAAAGCAAAACAAAAACGTGCCAAACGTCTAGGTTTCCTCGGAAATAAGACGAAA
GATGCACAGAAGGGCCATGGTCTAGGGGGGACAAGGACCTCAGCTGTTCAGCAAACAAAA
GACTCCAGAAAGCCAGAGGAAGTCAGGAAACAAAGACTTCAGAATCTGCAGGAAAAGCAG
AAGCTGTCAAGAGAACGTGAGATGATGAAGAGAAGAAACTTACAGAGCTTTCAGGAGGAC
ATCCTGCTGAGGCAAAGAGAGTTTGAACAGAAGGAGACGGAGATGAGGAGTTTGGAGAAG
CATGTAAATTTTGAAAATGAAAATTCAAGAAAAGCATATTACAGAGAGTTTAAAAAGGTT
GTGGAAGCATCTGATGTGATTTTGGAGGTGCTGGATGCTCGTGACCCTCTGGGCTGCAGA
TGTCCTCAGGTGGAACAGGCAGTCATCCAGAGTGGAACCAACAAGAAGATAGTATTGGTG
CTTAATAAAATAGATTTGGTGTCAAAGGAAATTGTGGAGAAATGGATTAAGTATCTTCGG
AATGAGTTTCCTACTGTGGCTTTTAAAGCATCCACGCAGCAACAAGCAAAGAACCTGAAA
CGCAGTAATGTGTCGGTGACCCAGGCCACCGCAGAGCTTCTCAGCACCAGTGCCTGTATT
GGAGCGGACTGCCTGATGAGGTTACTTGGTAATTATTGTCGCAACCAGGACATCAAGACA
GCCATCACTGTTGGTGTTGTGGGTTTTCCAAATGTGGGAAAGAGCAGTTTAATCAACAGC
CTGAAACGAGCACGAGCATGTCACGTCGGCGCCACCCCGGGTGTAACAAAGTGCCTTCAA
GAGGTACATTTGGACAAACACATTAAACTTCTCGACTGCCCCGGTATCGTCATGGCAACC
TCAACAAGTGACGCGGTGATGATTCTCCGCAACTGTGTGAAGATTGAACAGCTGGTAGAT
CCTCTGCCGCCTGTTGAGGCCATCCTACGGCGATGCAACAAAGTCCAGATCATGGAGCAT
TACGGCGTTCCCGACTTTCAGACAGCTGCAGAGTTCTTGGCAATGCTCGCCAGGCGTCAA
GGCAAATTAAGAAAAGGAGGTCTGCCAGACACAGACAAAGCAGCCAAGAGTGTGTTGATG
GACTGGACAGGGGGACGCATCACTTATTTCACACACCCTCCAGAGACGCACACTCTCCCC
ACTCATGTCAGTGCTGAGATTGTAACAGAGATGGGAAAAGCTTTCAACTGGGATGAGCTG
GAAAAGGGAAATCAGGAGGTTCTTGCAGAGTCGTCTTGCCCTGATGTCCAAATGGGCTTT
TGTATGGAGTCCATTGGAATGACACAAGGTGATCACGAGGAGCCACACTTTGGTCTACAG
ATTGAAGGAGGCTCCGGGGCAGAGCCAACAGCAGAAGATAAAACTGAGTTTATGGAAGAT
GATCAAGATCCAGAATTTGGACCAATGACAGTGGAGTTCAAATCACAGAAGGTGAACCGT
TTACCCGTGAGTGAAGCAGCTCCCCGGACTCCGAGTTTAGAGGACATTTTTGATATAGAT
CCTTTACAACAAGGCCATGCAATGCTGGCTGCCAACAAGAAGAGGAAAAAAAAGCAAAAA
AGAGCCGACAAAATTGCCACAAAGCTCTCCGATACTCTGACATCTGCCATGGATTTCTCA
TTTTCAGATCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKAKQKRAKRLGFLGNKTKDAQKGHGLGGTRTSAVQQTKDSRKPEEVRKQRLQNLQEKQKLSREREMMKRRNLQSFQEDILLRQREFEQKETEMRSLEK
MSKAKQKRAKRLGFLGNKTKDAQKGHGLGGTRTSAVQQTKDSRKPEEVRKQRLQNLQEKQKLSREREMMKRRNLQSFQEDILLRQREFEQKETEMRSLEK
Retrocopy
MSKAKQKRAKRLGFLGNKTKDAQKGHGLGGTRTSAVQQTKDSRKPEEVRKQRLQNLQEKQKLSREREMMKRRNLQSFQEDILLRQREFEQKETEMRSLEK


Parental protein
HVNFENENSRKAYYREFKKVVEASDVILEVLDARDPLGCRCPQVEQAVIQSGTNKKIVLVLNKIDLVSKEIVEKWIKYLRNEFPTVAFKASTQQQAKNLK
HVNFENENSRKAYYREFKKVVEASDVILEVLDARDPLGCRCPQVEQAVIQSGTNKKIVLVLNKIDLVSKEIVEKWIKYLRNEFPTVAFKASTQQQAKNLK
Retrocopy
HVNFENENSRKAYYREFKKVVEASDVILEVLDARDPLGCRCPQVEQAVIQSGTNKKIVLVLNKIDLVSKEIVEKWIKYLRNEFPTVAFKASTQQQAKNLK


Parental protein
RSNVSVTQATAELLSTSACIGADCLMRLLGNYCRNQDIKTAITVGVVGFPNVGKSSLINSLKRARACHVGATPGVTKCLQEVHLDKHIKLLDCPGIVMAT
RSNVSVTQATAELLSTSACIGADCLMRLLGNYCRNQDIKTAITVGVVGFPNVGKSSLINSLKRARACHVGATPGVTKCLQEVHLDKHIKLLDCPGIVMAT
Retrocopy
RSNVSVTQATAELLSTSACIGADCLMRLLGNYCRNQDIKTAITVGVVGFPNVGKSSLINSLKRARACHVGATPGVTKCLQEVHLDKHIKLLDCPGIVMAT


Parental protein
STSDAVMILRNCVKIEQLVDPLPPVEAILRRCNKVQIMEHYGVPDFQTAAEFLAMLARRQGKLRKGGLPDTDKAAKSVLMDWTGGRITYFTHPPETHTLP
STSDAVMILRNCVKIEQLVDPLPPVEAILRRCNKVQIMEHYGVPDFQTAAEFLAMLARRQGKLRKGGLPDTDKAAKSVLMDWTGGRITYFTHPPETHTLP
Retrocopy
STSDAVMILRNCVKIEQLVDPLPPVEAILRRCNKVQIMEHYGVPDFQTAAEFLAMLARRQGKLRKGGLPDTDKAAKSVLMDWTGGRITYFTHPPETHTLP


Parental protein
THVSAEIVTEMGKAFNWDELEKGNQEVLAESSCPDVQMGFCMESIGMTQGDHEEPHFGLQIEGGSGAEPTAEDKTEFMEDDQDPEFGPMTVEFKSQKVNR
THVSAEIVTEMGKAFNWDELEKGNQEVLAESSCPDVQMGFCMESIGMTQGDHEEPHFGLQIEGGSGAEPTAEDKTEFMEDDQDPEFGPMTVEFKSQKVNR
Retrocopy
THVSAEIVTEMGKAFNWDELEKGNQEVLAESSCPDVQMGFCMESIGMTQGDHEEPHFGLQIEGGSGAEPTAEDKTEFMEDDQDPEFGPMTVEFKSQKVNR


Parental protein
LPVSEAAPRTPSLEDIFDIDPLQQGHAMLAANKKRKKKQKRADKIATKLSDTLTSAMDFSFSDP
LPVSEAAPRTPSLEDIFDIDPLQQGHAMLAANKKR......ADKIATKLSDTLTSAMDFSFSDP
Retrocopy
LPVSEAAPRTPSLEDIFDIDPLQQGHAMLAANKKRXXXXXXADKIATKLSDTLTSAMDFSFSDP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide