RetrogeneDB

RetrogeneDB ID:
retro_olat_3
Organism:
Medaka ( Oryzias_latipes )
Location:
17:22661838-22663692 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
ENSORLG00000014774
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.09 %
Coverage:
99.84 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSORLG00000004946
Parental gene symbol:
FEM1C
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_3
ATGGATATAAACACGGCGGTTTTCTGCGCGGCCAGAGAGGGTAAGCTAAAACTTCTCCAG
AAGTTGCTGAGCAACAAAAGTCCAGAGGAGCTGGAGGTTTTGGCCGGGGAGAAAACGCAG
GGAGGCACCGCATTGCTGATCGCCTCCCGGAACGGACACTTGGAGGTGGTGGACTACCTG
GTGGCTCACTGTAAGGCGAACGTGGAGCTCGGCGGCTCCGTCAACTTTGACGGGGAGACC
ATCGAGGGGGCTCCGCCGCTGTGGGCGGCTTCGGCCGCCGGTCACCTCCCGGTGGTGAAG
ACGCTTCTGAAACACGGCGCGTCGGTGAACAACGCCACTCTGACCAATTCTACGCCGCTC
CGCGCCGCCTGCTTTGACGGTCACCTGGAGATCGTCCGCTACCTGGTGGAGCACAAAGCC
GACATGGAGGTGGCCAACCGCCACGGTCACACCTGCCTCATGATCTCCTGCTACAAAGGC
CACAAGGAGATCGCCAAATTCCTCCTTGATCGAGGTGCGGACGTGAACCGCAAAAGCGTG
AAGGGGAACACCGCCCTCCACGACTGCGCAGAGTCCGGGAGCCTGGAGATCATGAAGATG
CTGTTGAAGTGCAATGCCCGAATGGAGAGGGATGGCTACGGAATGACCCCCCTGCTGGCT
GCAAGTGTCACGGGTCACACTAAAATCGTGGAATATCTCGCCCACCAGCCTTGGACCTCC
AGAGAGGAGCGCATTGATGCTCTGGAACTGTTAGGAGCCACCTTTGTGGACAAAAAGCGA
GATCTGATGGGGGCCATTAGGTACTGGAGGAGAGCCATGGAGCTGAGGCAGCCAGGGGAC
CAAGCCGGACCGCTGGCCAAGCCTCCACCCGGACCCCCGATCTCTGCGTATGGCTGTGCA
CAGGAGGTGAGCTCGGCAGAGGAGCTGGAGGCTTTGATCACAGACCCAGATGAAATGCGG
ATGCAGGCTTTGTTGGTCCGGGAGCGCATCCTCGGGCCGTCCCACCCAGACACCTCATTT
TACATCCGCTACAGGGGCGCTGTGTACGCCGACTCTGGCAACTTTGAGCGCTGTATCAGC
CTGTGGAAGTATGCCTTAGACATGCAGCAGAGCAACCTGGATCCTCTGAGTCCCATGACG
GCCGCCAGCTTCCTGTCTTTTGCAGAGCTTTTCTCTTTTGTTCTTCAGGACAGGTCCAAA
GGCACGCTGTCGACTAGCATCACCTTCCAGGATCTGATGACTGTGCTGGTGAAGAGCGTG
AGGGAGGTTGAGAGGGCCGTGGCCCAGAGGGATAGCCCCCCAGAGGCCCCCCAGTTCACC
AAGGCCCTCTACATCATCCTCCACCTCATTTTTTTACTGGAGAAGCTGGAGTGCACGCCG
GAGCAGGAGCACCAGAAGAAGCACACCGTGTACCGGCTCCTGAAGCTGAACCCCAGAGGT
CGGGGCGGCTTCACTCCCCTCCACATGGCGGCGGACAAGGAAACCACGTCGGTGGGCCGC
TACCCTGTGGGCCGCTTCCCCTCGCTGCCGGTGGCGGCGCTGCTCCTGGAATGCGGTGCA
GATGTGGATTCACGCGATTGTGAGAACAACACGCCACTGCACGTCGCAGCGAACAATAGC
TGTCCGGAGATCATGGCGCTGCTCATGAAGGCCGGCGCCCACTTTGACACCACAAATGCA
CAGAAGAAGATGGCCTGCGAGCTGCTGGACGAGCACAGCGGCGGGCACCCGGCTCTTTAT
ACTTTAAACTACATCACCCTCCAGTGCCTAGCGGCGCGGGCGATAGAGAAGCACAGGCTG
CCTTACAGAGGACTGATATCTAAAGAAATAGAGGCTTTTATTGAGCTGCACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDLKTAVFNAVRDGKLRLLQKLLENKDGHEVIKLMGEKTNGATPLLMAARYGHLELVEYLLECCSAPVEVGGSVSFDGETIEGAPPLWAASAAGHLKVVQ
MD..TAVF.A.R.GKL.LLQKLL.NK...E...L.GEKT.G.T.LL.A.R.GHLE.V.YL...C.A.VE.GGSV.FDGETIEGAPPLWAASAAGHL.VV.
Retrocopy
MDINTAVFCAAREGKLKLLQKLLSNKSPEELEVLAGEKTQGGTALLIASRNGHLEVVDYLVAHCKANVELGGSVNFDGETIEGAPPLWAASAAGHLPVVK


Parental protein
SLLGHGASVNSTTLTNSTPLRAACFDGHLDIVKYLVEHSADLEVANRHGHTCLMISCYKGHKDIAQYLLEKGADVNRKSVKGNTALHDCAESGSLEIMQM
.LL.HGASVN..TLTNSTPLRAACFDGHL.IV.YLVEH.AD.EVANRHGHTCLMISCYKGHK.IA..LL..GADVNRKSVKGNTALHDCAESGSLEIM.M
Retrocopy
TLLKHGASVNNATLTNSTPLRAACFDGHLEIVRYLVEHKADMEVANRHGHTCLMISCYKGHKEIAKFLLDRGADVNRKSVKGNTALHDCAESGSLEIMKM


Parental protein
LLQYGATMEQDAYGMTPILSASVTGHTNIVDYLTTLPQTSHTKRIDALELLGATFVDKKRDLLGALKYWKRAMDLRYV-DSNSIVHKPEPKHLVMAYDYA
LL...A.ME.D.YGMTP.L.ASVTGHT.IV.YL...P.TS...RIDALELLGATFVDKKRDL.GA..YW.RAM.LR...D......KP.P.....AY..A
Retrocopy
LLKCNARMERDGYGMTPLLAASVTGHTKIVEYLAHQPWTSREERIDALELLGATFVDKKRDLMGAIRYWRRAMELRQPGDQAGPLAKPPPGPPISAYGCA


Parental protein
REVTNAEELDSLISDPDEMRMQALLIRERILGPQHPDTSYYIRYRGAVYADSGNFERCINLWKYALEMQQSNLDPLSPMTASSLLSFAELFSFMLQDRAK
.EV..AEEL..LI.DPDEMRMQALL.RERILGP.HPDTS.YIRYRGAVYADSGNFERCI.LWKYAL.MQQSNLDPLSPMTA.S.LSFAELFSF.LQDR.K
Retrocopy
QEVSSAEELEALITDPDEMRMQALLVRERILGPSHPDTSFYIRYRGAVYADSGNFERCISLWKYALDMQQSNLDPLSPMTAASFLSFAELFSFVLQDRSK


Parental protein
GLLGTSVSFEDLMGILSKSVMEIERAIKQSGPMPPDPAQLSKALSIILHLICLLEKVPCTAEQDHFKKETIYRFLKLQPCGKNGYSPLHLAVDRNTTCVG
G.L.TS..F.DLM..L.KSV.E.ERA..Q....PP...Q..KAL.IILHLI.LLEK..CT.EQ.H.KK.T.YR.LKL.P.G..G..PLH.A.D..TT.VG
Retrocopy
GTLSTSITFQDLMTVLVKSVREVERAVAQR-DSPPEAPQFTKALYIILHLIFLLEKLECTPEQEHQKKHTVYRLLKLNPRGRGGFTPLHMAADKETTSVG


Parental protein
RYPVCKFPSLTVASILLECGADVNSKDEDDNSPLHIAASNGHPDIMNLLISNGTHFDSTNAFQQTACDLLDEKELARNVIQPINHTTLQCLAARAIVKHS
RYPV..FPSL.VA..LLECGADV.S.D...N.PLH.AA.N..P.IM.LL...G.HFD.TNA....AC.LLDE...........N..TLQCLAARAI.KH.
Retrocopy
RYPVGRFPSLPVAALLLECGADVDSRDCENNTPLHVAANNSCPEIMALLMKAGAHFDTTNAQKKMACELLDEHSGGHPALYTLNYITLQCLAARAIEKHR


Parental protein
LAYQGNIPEKLEAFILLH
L.Y.G.I....EAFI.LH
Retrocopy
LPYRGLISKEIEAFIELH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u