RetrogeneDB ID:
retro_olat_30
Organism:
Medaka ( Oryzias_latipes )
Location:
17:12356656-12357338 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.37 %
Coverage:
76.43 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
AKTIP
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_30
CATGCTTCCAACGGGCCTTTTTATTTGGAGTACTCCCTTCTGGCTGAGTTTACACTCGTG
ATTAAGCAGAAACTCCCTGGAATTTACGTTCAGCCATCGTACAAGTCTGCTTTAATGTGG
TTTGGAGTCATATTCATCCGACACGGTCTGTACCAGGATGGGGTCTTCAAATTCACGGTG
TATATTCCTGACAACTATCCAGACGGACAGTGCCCCAAACTAGTATTTGACATCCCAGTC
TTTCATCCACTGGTGGACCTGGTATCTGGAGAACATTGATGTCAGAAGAGCTTTTACCAA
ATGGAGACGGAATCACAACCACATCTGGCAGGTCTCGATGTATGCACGCACGGTTTTTTA
CAAGATCAACACTGCCGAGCCGCTGAACCCAGAAGCTGCTGTCCTGTATGAAAAAGATGT
GCAGTTATTCAAAAGCAAAGTGGTGGATAGTGTGAAGCTATGCAACAGTCATCTTTTTGA
CCAGCCTAAGATCGATGATCCTTACGCAATAAGTTTTTCTCCGTGGAATCCGGCTGTTCA
TGAAGAAGCAAAGGAAAGGATGTTTGCATACAAAAGACGTCCGGAGGAGCAGCAGCACAA
GGGAATGCAGGTGTCTGGTTTGTCGCGGGTGAAACCTGGTTCAACTCAGCCCTTCAGCAA
AGATGACAGTCCACCACAGAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HASYGPFYLEYSLLAEFTLVIKQKLPGIYVQPSYKSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGQCPKLVFDIPVFHPLVDPVSGE-LDVRRAFT
HAS.GPFYLEYSLLAEFTLVIKQKLPGIYVQPSYKSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGQCPKLVFDIPVFHPLVD.VSGE..DVRRAFT
Retrocopy
HASNGPFYLEYSLLAEFTLVIKQKLPGIYVQPSYKSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGQCPKLVFDIPVFHPLVDLVSGE\IDVRRAFT


Parental protein
KWRRNHNHIWQVLMYARTVFYKINTAEPLNPEAAVLYEKDVQLFKSKVVDSVKLCNSHLFDQPKIDDPYAISFSPWNPAVHEEAKERMFAYKRRPEEQQH
KWRRNHNHIWQV.MYARTVFYKINTAEPLNPEAAVLYEKDVQLFKSKVVDSVKLCNSHLFDQPKIDDPYAISFSPWNPAVHEEAKERMFAYKRRPEEQQH
Retrocopy
KWRRNHNHIWQVSMYARTVFYKINTAEPLNPEAAVLYEKDVQLFKSKVVDSVKLCNSHLFDQPKIDDPYAISFSPWNPAVHEEAKERMFAYKRRPEEQQH


Parental protein
KGMQVSGLSWVKPGSTQPFSKDDSPPQN
KGMQVSGLS.VKPGSTQPFSKDDSPPQN
Retrocopy
KGMQVSGLSRVKPGSTQPFSKDDSPPQN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide