RetrogeneDB ID:
retro_olat_31
Organism:
Medaka ( Oryzias_latipes )
Location:
18:1911911-1912554 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.93 %
Coverage:
62.43 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_31
GCAAGACTCCATTTTTGAAGAAGAAGCATGTTGAAGCTCGTTTGGAGTTTGCCACACAAC
ATTTGGTTAACCCATGACATTCTGGGAGAAGATACTCTGGTCAGATGAGACCAAAATTGA
ACTCTTTTGGAGAAAAAATGGCACCGCACATCACCCCCAAAACACCATACCAACAGTCAA
GTTTGGAGGTGGGAGCATCATGGCGTGGGGCTGTTTTTCAGCATGTGGCACTGGTAGACT
TCATATCATTGAAGGAATAATGACTGGAGAAAAGTATGGAGACATTCTTGATCAGAATCT
GCTGTCATCTGCCAGGCTGCTGAAGATGAAAAGAGGGTGGATCTTTCATCAAGATAACGA
TCCAAAGCACACAGCCAAGGTAACACTCAACTGGTTGAAGAAAAAGAAAATCAAGCTGCT
AGAATGGCCCAGTCAATCGCCAGACTTGAATCCAATTGAAAATCTTTGGAAAGAACTGAA
GATCCGGGTTCACTGAAGAGACCCCCGGAACCTTGAAGATTTGAAGGCAGTTTGTGTGGA
TGAATGGGCCAAAATCACACCTGAGCAATGTATTCCACTGGTTTCTCCATACAGGAGGCG
TCTTGAGGCTGGAATCACCAACAAAGGTTTTTGCACTAAGTAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ARLEFATQHLIFTV-GVAKNNWETVKYFEEIPLIYFDX--TCLEEKWH-PHQPQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTGKKYRDILDQN
ARL.F........V.....N.W.T.....E..L...D...T.LE.KWH..H.PQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTG.KY.DILDQN
Retrocopy
ARLHF*RRSMLKLVWSLPHNIWLTHDILGEDTLVR*DQN*TLLEKKWH\AHHPQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTGEKYGDILDQN


Parental protein
LLSSARLLKMKRGWIFQQDNDPKHTAKVTLNWLKKKKIKLLQWPSQSPDLNPIENLWKELKIRVNRRDPRNLEDLKAVCVDEWAKITPEQCIPLVSPYRR
LLSSARLLKMKRGWIF.QDNDPKHTAKVTLNWLKKKKIKLL.WPSQSPDLNPIENLWKELKIRV..RDPRNLEDLKAVCVDEWAKITPEQCIPLVSPYRR
Retrocopy
LLSSARLLKMKRGWIFHQDNDPKHTAKVTLNWLKKKKIKLLEWPSQSPDLNPIENLWKELKIRVH*RDPRNLEDLKAVCVDEWAKITPEQCIPLVSPYRR


Parental protein
RLEAVITNKGFCTKY
RLEA.ITNKGFCTKY
Retrocopy
RLEAGITNKGFCTKY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide