RetrogeneDB ID:
retro_olat_32
Organism:
Medaka ( Oryzias_latipes )
Location:
2:7088531-7089346 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.88 %
Coverage:
90.67 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_32
ACCATTGGGGCCATCATCCGGAAGTGGAAAGAACACGGCATTACCATAAACCTGCCACGA
CCAGGTGCTCCTCGCAAGATTTCAGACAGAGGAGTCAGAACAATCATCAGAAAGGTTCTC
CAACAGCCCAGGACCACTCGTGGAGAGCTTCAGAAAGACCTGGAATCAGCAGGTACCGTT
GTTTCAAAGAAAACAATAAGTAATGCACTCAACCGCCATGGCCTCCATGCACGCACACCA
CGAAAGACTCCATTTTTGAAGAAGAAGCATGTTGAAGCTCGTTTGGAGTTTGCGACAACA
TTTGGATAAACCCATGACATTGGAGAAGATACTCTGGTCAGATGAGACCAAAATTGAACT
CTTCGGATGTCATAAGACACAACATGTTTGGAGGAAAAATGGCACCGCACATCACCCCCA
AAACACCATACCAACAGTCAAGTTTGGAGGTGGGAGCATCATGGCGTGGGGCTGTTTTTC
AGCATGTGGCACTGGTAGACTTCATATCATTGAAGGAATAATGACTGGAGAAAAGTATCA
AGACATTCTTGATCAGAATCTGCTGTCATCTGCCAGGCTGCTAAAGATGAAAAGAGGGTG
GATCTTTCAGCAAGACAACGATCCCAAGCACACAGCCAAGGTAACACTCAACTGGTTGAA
GAAAAAGAAAATAAAGCTGCTAGAATGGCCCAGTCAATCACCAGACTTGAATCCAATTGA
AAATCTTTGGAAAGAACTGAAGAGCCGGGTTCACAGAAGAGACCCCCGGAACCTTGAAGA
TTTGAAGGCCAATTCATGTGGATGAATGGGCCAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TFGAIIRKWKEHGITINLPRPGVPHKISDRGVRTKLNESTVGPRDDTGELQKDLESAGTVVSKKTISNALNRHGLHARTPRKTPFLKKKHVEARLEFAT-
T.GAIIRKWKEHGITINLPRPG.P.KISDRGVRT........PR...GELQKDLESAGTVVSKKTISNALNRHGLHARTPRKTPFLKKKHVEARLEFAT.
Retrocopy
TIGAIIRKWKEHGITINLPRPGAPRKISDRGVRTIIRKVLQQPRTTRGELQKDLESAGTVVSKKTISNALNRHGLHARTPRKTPFLKKKHVEARLEFAT\


Parental protein
HLDKPMTCWEKILWSDETKIELFGCHKTQHVWRKNGSAHHPQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTGEKYPDILDQNLLSSARLLKMKR
HLDKPMT..EKILWSDETKIELFGCHKTQHVWRKNG.AHHPQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTGEKY.DILDQNLLSSARLLKMKR
Retrocopy
HLDKPMTL-EKILWSDETKIELFGCHKTQHVWRKNGTAHHPQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTGEKYQDILDQNLLSSARLLKMKR


Parental protein
GWIFQQDYHPKHTAKVTLNWLKKKKIKLLEWPSQSPDLNPIENLWKELKIRVHRRDPRNLEDLKA-VCVDEWAK
GWIFQQD..PKHTAKVTLNWLKKKKIKLLEWPSQSPDLNPIENLWKELK.RVHRRDPRNLEDLKA...VDEWAK
Retrocopy
GWIFQQDNDPKHTAKVTLNWLKKKKIKLLEWPSQSPDLNPIENLWKELKSRVHRRDPRNLEDLKA\IHVDEWAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide