RetrogeneDB ID:
retro_olat_34
Organism:
Medaka ( Oryzias_latipes )
Location:
2:18267279-18267666 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
54.26 %
Coverage:
55.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
OLA.17735
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_34
CTCCCCCAGCATTATGTAAGTGAAAAGGAGTATTGCTGCAACAAGCAGAGGAACTCCAGA
GTCGAACAGGGGGAACCAGAGTCTCAACAGATTAAAGAGGAATATGAGGGACCGGAACCT
GCACAGATGAAAGGGGAGCAAGAAGGACTCTACATCATTCAGGTTGAAGAAGAGCTTGAT
CTGAAGCAGGAAACTGACACCTTGATAGTGACTCCTACAGATCTAAACAATCTGCAGAGC
TTTAATGTAACTGATAGTCAGGATGAAGAAGAAGGCCCACATGAAGAATCAACATCAACT
ACAGATGGAGAGACAGACCCACAGAACAAAGATCGGAGGAAGAGAAAAGACAGAAGTCCT
GTCCAAAACGTGGACAGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIK---EEPDELCISQDEDQLDLKQETDTLMEIPTYEEYENSEADLNNQQSFNVTDSQDQEGNQHEESTST
LPQH...E.E..CN.QRN.RVEQ.EPE..QIK...E.P...........L...Q....L..............DLNN.QSFNVTDSQD.E...HEESTST
Retrocopy
LPQHYVSEKEYCCNKQRNSRVEQGEPESQQIKEEYEGPEPAQMKGEQEGLYIIQVEEELDLKQETDTLIVTPTDLNNLQSFNVTDSQDEEEGPHEESTST


Parental protein
TDEETDPQNIDQRKRRDRRHVQSVDSSHM
TD.ETDPQN.D.RKR.DR..VQ.VDSSHM
Retrocopy
TDGETDPQNKDRRKRKDRSPVQNVDSSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide