RetrogeneDB ID:
retro_olat_35
Organism:
Medaka ( Oryzias_latipes )
Location:
23:9574253-9575249 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
75.96 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_35
AAATGAAGGAGAGAATTGTCCCAGGACATTAGAAACAAAATTATAGGCAAACATTATAAA
GGTAAAGGCTATAAAACCATCTCTAAGCAGCTTGAAGTTCCTGTGTCGACAGTGGCACAT
ATTATTCAGAAGTTAAAGACCCACAAGACAGTAGACAACCTCCCTGGACGTGGCAGGAAG
AGGAAAATTGATGACAAATTGAGGAGACAGATAGTTGGAACTGTATCCAAAGAGCCCAGA
ACAACCTACAAAGACATTAAAGGTGAACTCCTAGATCAAGGTACATCAGTGTCAGATCGC
ACCATTCGTCGTTGTTTGAGCCAGAGTGGATTTCATGGGAGATGACCAAGGAGGACACCA
CTGTTGAAAGGAAATCATAAAAAAGCCAGACTTGAATTTGCAAAAATGCATGTTGACAAT
CCACAAAGCTTCTGGGAAAATGTCCTTTGGTCATATGAGACAAAACTGGAGCTTTTTGGT
AACGCACATCAGCTCTATGTTCGTAGACTCAAAAATGAAGCATACAATGAAAAGAATACT
GTCCCTGCTGTGAAACATGGAGGAGGCTCAGTTCTGTTTTGGGGCTGCATATGGCACAGG
GTGTTGAAGTTGTGCAAGGTAAAATGAAATCTCAAGATTATTAAGGCATTCTGGATAGAA
ATGTGCTGCCTAGTGTCAGAAAGCTTAGTCTCAGTCGCAGGTCATGGGTCTTCCAACAGG
GCAACGATCCAAAACACACAGCCAGAAACCTCCAATAATGGCTCAGAGAAAAGCGTTGGA
CTATTCTGAAGTGGCCTTCTATGAGCCCAGATCTGAATCCCATTGAACATCTGTGGAAGG
AGCTGAAGAAGACACCCGTCAAACCTAAGACAACTGGAACAGTTTGCTCATGAGGAGTTG
GCCAAAATACCTGTCGACAGGTGCAGAAGGCTCATTGACAAATACAAAAACCATTTAATT
GCAGTGATTGCCTCAAAAGGTTGTGCAACAAAATAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KPRRELSQDIRNKIIDKHRKGKGYKTISKQLEVPVTTVAHTIQKFKTHRTVVNLPGRRERAELRTR-KKELVMSVEKY---AFSEHQREYTHQGTSVSNH
K.RRELSQDIRNKII.KH.KGKGYKTISKQLEVPV.TVAH.IQK.KTH.TV.NLPGR..............V..V.K...........E...QGTSVS..
Retrocopy
K*RRELSQDIRNKIIGKHYKGKGYKTISKQLEVPVSTVAHIIQKLKTHKTVDNLPGRGRKRKIDDKLRRQIVGTVSKEPRTTYKDIKGELLDQGTSVSDR


Parental protein
TIRGCLSQSGLHGRRPRRTPLLKGNHK-TRLEFAKMHVDKPQSFWENVLWTDETKLELFGKAHQLYVRRLKNEAYNEKSTVPTVKHGGGSVLFWGCF-AA
TIR.CLSQSG.HGR.PRRTPLLKGNHK..RLEFAKMHVD.PQSFWENVLW..ETKLELFG.AHQLYVRRLKNEAYNEK.TVP.VKHGGGSVLFWGC...A
Retrocopy
TIRRCLSQSGFHGR*PRRTPLLKGNHKKARLEFAKMHVDNPQSFWENVLWSYETKLELFGNAHQLYVRRLKNEAYNEKNTVPAVKHGGGSVLFWGCI/MA


Parental protein
SGTECLEVVQGQMKSPDYQGILGRNVLPSVRKLGLSRRSWVFQQDNDPKH-AKNPQEWLREKHWTILKWPSMSPDLNPIEHLWKK-RRHP-SNLRQLEQF
.G.E...VVQG.MKS.DY.GIL.RNVLPSVRKL.LSRRSWVFQQ.NDPKH.A.N.Q.WLREK.WTILKWPSMSPDLNPIEHLWK.....P.SNLRQLEQF
Retrocopy
QGVE---VVQGKMKSQDY*GILDRNVLPSVRKLSLSRRSWVFQQGNDPKHTARNLQ*WLREKRWTILKWPSMSPDLNPIEHLWKELKKTP\SNLRQLEQF


Parental protein
AHEEWARIPVDRCRRLIDKYRNSLIAVIASKGCATKY
AHEE.A.IPVDRCRRLIDKY.N.LIAVIASKGCATKY
Retrocopy
AHEELAKIPVDRCRRLIDKYKNHLIAVIASKGCATKY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide