RetrogeneDB ID:
retro_olat_38
Organism:
Medaka ( Oryzias_latipes )
Location:
5:2356316-2357230 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.43 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_38
GAGGTGGCTGACACCTTCAATGTGTCTCAGCGTCAAGTACAAAGAATAAGAAAAAGATTT
GAAGAGACTGGAGATGTTTTTGACAAGCCCAGGTCCGGCAGACCCTGCAAGACAACTGCT
CGGGAGGACCGTTTGTTGGTTCCAAAATCCAAGGCCAGCCTCTTTTCCACTGCAGCAGAG
CTCCACCAGGCCTGGTCAACTCAAGTCCCTGTGTCAACCAGAACAGTTTGTAGAATTCTG
TCTCAAAATGGCCTCCATGGTCGAATCAGTGCCCAGAAACCAGCACTAAACAAAAGGCAA
TTGAAAAAACGTGTGGCATTTGCCAAGGCCCACAGCTGCTAAAAGGATGGACGCTGGAAA
AGTGGCAGAAGGTGGATTTCTCAGATGAGTCTTCAGTTGAATTACATCACAGGAGACCAA
CTGGAGGCCGCATGGACCCAAGACTCACCCAGAAAACCGTTAAGTTTGGTGGCGGAAAAA
TCATGGTCTGGGGTTACATCCAGTATGGGGGTGTGCGAAACATTTGCAGGGTGGAAGGCA
ATATCAATAGCCTAAAATATCAAGAAGTATTAGCTACCTCTTACATTCCCATCCATAAAA
GGGATCAACTTCTGCAGCAGAATGGTGTTCCATCGCATACTTCCATCTCTACATCAAAGT
TCCTCAAGGCGAAGAAGATCAAGGTGCTCCAGGACTGGCCAGCCCAGTCACACGACATGA
ACATCATTGAGCATGTCTGGGGTAGAATGAAAGAGGAAGCATGGAGGACGAAACCAAAGA
ATCTTGATGAACTCTGGGAGGCATGTAAGACTGCTTTCTTTGCTATTCCCGATGACTTCA
TCGATAAATTGTATGAATCATTGTCAAACCGCATGGATACTGTCCTTCAAGCTCATGGAA
GTCATACAAGATAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EMSSLLNIPQSAVSSIRTTWKSLGTTATQPPSGRPGNLMERSQRMLKLRVQRETLLNLEDSLSRRVGAGEHLNGRTVCRVLSENGLHGPSSAQKPALNKR
E.....N..Q..V..IR......G.....P.SGRP.....R..R.L........L......L............RTVCR.LS.NGLHG..SAQKPALNKR
Retrocopy
EVADTFNVSQRQVQRIRKRFEETGDVFDKPRSGRPCKTTAREDRLLVPK-SKASLFSTAAELHQAWSTQVPVSTRTVCRILSQNGLHGRISAQKPALNKR


Parental protein
QLKK-TCGICQGPEPAK--RMDAGKVADGGDESSVELHHRKPTGARMDSRFTQKTFKFGGRKIMVRGYILYGGVRNICRVEGNINSLKYQEVLATSSIPN
QLKK.TCGICQGP...K..........D..DESSVELHHR.PTG.RMD.R.TQKT.KFGG.KIMV.GYI.YGGVRNICRVEGNINSLKYQEVLATS.IP.
Retrocopy
QLKK/TCGICQGPQLLKGWTLEKWQKVDFSDESSVELHHRRPTGGRMDPRLTQKTVKFGGGKIMVWGYIQYGGVRNICRVEGNINSLKYQEVLATSYIPI


Parental protein
HKRGQILQQDGAPSHTSISTSKFLKAKKMKVLQDRPAQSPDMNIIEHVWGRMKEGAWKTKPKNLDELWEAWKTAFFAIPDDFIHKLYESLSNRMDAVLQA
HKR.Q.LQQ.G.PSHTSISTSKFLKAKK.KVLQD.PAQS.DMNIIEHVWGRMKE.AW.TKPKNLDELWEA.KTAFFAIPDDFI.KLYESLSNRMD.VLQA
Retrocopy
HKRDQLLQQNGVPSHTSISTSKFLKAKKIKVLQDWPAQSHDMNIIEHVWGRMKEEAWRTKPKNLDELWEACKTAFFAIPDDFIDKLYESLSNRMDTVLQA


Parental protein
PGSHTRY
.GSHTRY
Retrocopy
HGSHTRY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide