RetrogeneDB ID:
retro_olat_39
Organism:
Medaka ( Oryzias_latipes )
Location:
5:12245237-12245585 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.79 %
Coverage:
63.04 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_39
GATCTCTGCATCCAGCAGAGGAACTTCAGAGTGGAACATGAAGAACTGGAACGTCTACAT
ACTAAAGAGGAACCAGGGGAACTTTGCATCAGTCAGGATGAAGATCAGATTGATCTGAAG
CAGGAGACTGATACCTTGATGGAGATTCCTACTTATGAGGAAGATGAGAACAGTGAAGCA
GATCTAAACAATCAGCAGAGCTTTAATGTAACTGATAGTCAGGATGAAGAAGGAAACCAA
CATGAAGAATCAACATCAACTACAGATGAAGAGACAGATCCACAGAACAGAGATCAGAGG
AAGAGGAGGGACAGAAGTCATGTCCAAAGTGTGGACAGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTDEETDPQNRDKR
DLC.QQRNFRVE.EE.E....KEEP.ELCISQDED...LKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTDEETDPQNRD.R
Retrocopy
DLCIQQRNFRVEHEELERLHTKEEPGELCISQDEDQIDLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTDEETDPQNRDQR


Parental protein
KRRDRRHVQSVDSSHM
KRRDR.HVQSVDSSHM
Retrocopy
KRRDRSHVQSVDSSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide