RetrogeneDB ID:
retro_olat_4
Organism:
Medaka ( Oryzias_latipes )
Location:
23:20422238-20422499 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.72 %
Coverage:
96.43 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
cox6b2 (2 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit VIb polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]

Genomic region (view in browser)





>retro_olat_4
ATGTCTGAAACCATAGAGGAAAAGATAAAAACCTACAGGACGGCTCCTTTCGATGCCCGC
TTCCCCAACACTAACCAGACCCGCAACTGTTACCAGAACTACCTGGACTTCCACAGGTGC
AACAAGGCCTTGTCATCCAAAGGCCAGGATGTGGCTCCATGCCAGTGGTACCAGAGGGTT
TACAAGAGCCTCTGCCCCATGGGCTGGGTGGCAAAATGGGATGAACAAATTGAAAACGGA
AATTTCCCTGGAAAGATCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEKLKNYRTAPFDARFPNTNQTRNCYQNYLDYHRCNKALSAKNQDPAPCQWYHRVYKSLCPISWVQKWDGQLEAGTFPGKI
EEK.K.YRTAPFDARFPNTNQTRNCYQNYLD.HRCNKALS.K.QD.APCQWY.RVYKSLCP..WV.KWD.Q.E.G.FPGKI
Retrocopy
EEKIKTYRTAPFDARFPNTNQTRNCYQNYLDFHRCNKALSSKGQDVAPCQWYQRVYKSLCPMGWVAKWDEQIENGNFPGKI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide